Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g2001 ATGTCGATAAACCACTACTCACCAGAAGCCAGACTATACTGGAGCGAGCAACAACAAGCAGCCACGTGGCTGGGAAACTCTCACACTCCTCGTTTCAACCTGAACGACAACCAGGAGGAGGTGGAGGAGGAGGAAGAGGAGGTGGTGGTGGCGGCGGCGGCGGAGAACGGTGGTGGTGGGGCGGCGGGAGAGGAGAAGGAAACGATGTTCGAGAAGCCGCTAACGCCGAGCGATGTGGGGAAACTGAACCGGTTGGTGATCCCGAAACAGCACGCGGAGAAGCACTTCCCGCTGGAGTCTTCGTCGTCGTCGTCTTCGTGCGGTGACAGCGCGAAAGGTGTGTTACTGAGTTTCGAGGACGAGTCCGGTAAGTGCTGGCGTTTCCGTTACTCTTATTGGAACAGTAGCCAGAGTTACGTTTTGACGAAAGGATGGAGCCGTTACGTGAAGGACAAACGCCTCCACGCTGGCGACGTCGTTTTCTTCCACAGACACCGAACCCATCCCCAACGGTTCTTCATAACCTCCACCCGCCGCCAAGCGAACCCCCCCGCTCACGTTAACTCCACCGCCACAGCTTCCTTCTACTCTGCGCAGCCTTATCCTGCGCATCACCTCCCTTTCCCATACCAACCTCTCTCTCTTCATGCAGCACCAGGTGGAGGGTCCCAAGGACAGAACCAAACGACACCGGGAGGGAACAGTTCAGGTGGCAGGGTGCTGAGGCTGTTTGGGGTGAACATGGAATGCCAACCTCATAATGATTCCCAAAACTCCACGCCACAATGCTCTTACACTCTCTCCTCAACGCTTTCCCACCACCACTTACACCGTCAAACCTCTTACTCTTCTTCCCCAAACCCTCACCATCACATGCTACGTCAACTACCATAA 894 0.5582 MSINHYSPEARLYWSEQQQAATWLGNSHTPRFNLNDNQEEVEEEEEEVVVAAAAENGGGGAAGEEKETMFEKPLTPSDVGKLNRLVIPKQHAEKHFPLESSSSSSSCGDSAKGVLLSFEDESGKCWRFRYSYWNSSQSYVLTKGWSRYVKDKRLHAGDVVFFHRHRTHPQRFFITSTRRQANPPAHVNSTATASFYSAQPYPAHHLPFPYQPLSLHAAPGGGSQGQNQTTPGGNSSGGRVLRLFGVNMECQPHNDSQNSTPQCSYTLSSTLSHHHLHRQTSYSSSPNPHHHMLRQLP* 298
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g2001 297 SUPERFAMILY DNA-binding pseudobarrel domain 66 176 IPR015300 -
Pvu1g2001 297 Pfam B3 DNA binding domain 70 174 IPR003340 GO:0003677
Pvu1g2001 297 MobiDBLite consensus disorder prediction 271 290 - -
Pvu1g2001 297 ProSiteProfiles B3 DNA-binding domain profile. 70 180 IPR003340 GO:0003677
Pvu1g2001 297 MobiDBLite consensus disorder prediction 216 240 - -
Pvu1g2001 297 MobiDBLite consensus disorder prediction 271 297 - -
Pvu1g2001 297 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0156000 30 272 - -
Pvu1g2001 297 CDD B3_DNA 69 167 IPR003340 GO:0003677
Pvu1g2001 297 SMART B3_2 70 178 IPR003340 GO:0003677
Pvu1g2001 297 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 30 272 IPR044800 GO:0003700
Pvu1g2001 297 MobiDBLite consensus disorder prediction 220 236 - -
Pvu1g2001 297 Coils Coil 34 54 - -
Pvu1g2001 297 Gene3D - 58 188 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu1g2001 Pvu-Chr1 45885545 45887392 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu1g2001 66 269 RAV Transcription Factor Family AT5G06250 51.389 1.20e-60 192
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Pvu1g2001 B3 7.4e-28 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu1g2001 - - var:108328437 480.715
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu1g2001 1 45885545 45887392 Pvu1g2001 1 45885545 45887392 ECH
Pvu1g2001 1 45885545 45887392 Pvu7g2372 7 47078235 47080493 PCT