Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g1998 ATGCCATGCAACATAAACTCTTCATTTCCCTTGTTCACTGTCTGCAACATCGAATTGAATTCCATGGCGGCTGTGAGAAAAATAATTCAGGTCAATAAAAATAAAACCTTTGCGCCATCTCTTTTAGCTTTTCGCCGAGGAATTGCTTACAAGCTTTTTGTTGGAGGACTGTCCTTCTACACCACAGAGAAAGCATTGTCAGATGCATTTTCCAACTACGGGCAAGTTATTGAAGCAAAAGTTGTGACAGATAGGGTGTCAGACAGATCCAAGGGATTTGGGTTTGTCACCTTTGCTTCACCAGACGAGGCTGAGAATGCCATAACAGAGATGAAAGGAAAGACAATAAATGGACGTGTTATCTTTGTTGATTATGCAAAGCCCAATATCAACGGTAATGCTGCGATGCCAATTGCCAGAGGACCTCCCGAACCAACACCAGACACTTGA 450 0.4267 MPCNINSSFPLFTVCNIELNSMAAVRKIIQVNKNKTFAPSLLAFRRGIAYKLFVGGLSFYTTEKALSDAFSNYGQVIEAKVVTDRVSDRSKGFGFVTFASPDEAENAITEMKGKTINGRVIFVDYAKPNINGNAAMPIARGPPEPTPDT* 150
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g1998 149 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 52 121 IPR000504 GO:0003723
Pvu1g1998 149 Gene3D - 43 143 IPR012677 -
Pvu1g1998 149 PANTHER TRANSFORMER-2-RELATED 22 148 - -
Pvu1g1998 149 PANTHER GLYCINE-RICH RNA-BINDING PROTEIN 4, MITOCHONDRIAL-LIKE 22 148 - -
Pvu1g1998 149 SMART rrm1_1 51 124 IPR000504 GO:0003723
Pvu1g1998 149 SUPERFAMILY RNA-binding domain, RBD 50 140 IPR035979 GO:0003676
Pvu1g1998 149 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 50 128 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu1g1998 Pvu-Chr1 45862097 45863828 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu1g1998 52 127 Eukaryotic Initiation Factors Gene Family AT2G23350 35.526 1.07e-08 50.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu1g1998 - - pvu:PHAVU_001G192800g 299.671
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu1g1998 1 45862097 45863828 Pvu1g1998 1 45862097 45863828 ECH