Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g1994 ATGAGAGAGGAGATTTGGTGTGAGAGGAAAATGTGGGCAAGCGCAGAAGGTGGTGCTCCAGAGGTTAATCTGGAAACTTCTATGGGGTCCTTCACAGTGGAGCTGTACTACAAGCATGCGCCCAGAACTTGCAGGAACTTCATTGAACTGTCTCGCAGAGGTTACTACGACAACGTTAAATTCCACAGGATCATTAAGGACTTCATAGTACAAGGTGGAGATCCCACTGGAACTGGAAGAGGAGGGGAATCCATATACGGTGCAAAGTTTGAAGATGAGATAAAACGAGAGTTGAAACACACTGGTGCTGGTATCTTATCCATGGCAAATGCTGGCCCAAATAGCAATGGTAGTCAGTTCTTTATTACTCTGGCACCTTGCCCTTCTCTCGATGGAAAACACACAATATTCGGAAGAGTGTGCAGCGGTATGGAAATTATCAAACGACTTGGCAGCGTCCAAACAGATAACAACGATAGGCCCATCCATGATGTGAAGATACTGCGTACCTCAGTGAAGGATTAG 525 0.459 MREEIWCERKMWASAEGGAPEVNLETSMGSFTVELYYKHAPRTCRNFIELSRRGYYDNVKFHRIIKDFIVQGGDPTGTGRGGESIYGAKFEDEIKRELKHTGAGILSMANAGPNSNGSQFFITLAPCPSLDGKHTIFGRVCSGMEIIKRLGSVQTDNNDRPIHDVKILRTSVKD* 175
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g1994 174 Gene3D - 5 174 IPR029000 -
Pvu1g1994 174 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 35 50 IPR002130 GO:0000413|GO:0003755
Pvu1g1994 174 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 61 73 IPR002130 GO:0000413|GO:0003755
Pvu1g1994 174 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 104 119 IPR002130 GO:0000413|GO:0003755
Pvu1g1994 174 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 119 131 IPR002130 GO:0000413|GO:0003755
Pvu1g1994 174 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 132 147 IPR002130 GO:0000413|GO:0003755
Pvu1g1994 174 PIRSF Peptidylpro_ismrse 7 174 IPR024936 GO:0003755
Pvu1g1994 174 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE-LIKE 1 15 173 - -
Pvu1g1994 174 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 22 171 IPR002130 GO:0000413|GO:0003755
Pvu1g1994 174 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE-RELATED 15 173 IPR044666 -
Pvu1g1994 174 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 25 172 IPR002130 GO:0000413|GO:0003755
Pvu1g1994 174 SUPERFAMILY Cyclophilin-like 21 172 IPR029000 -
Pvu1g1994 174 ProSitePatterns Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature. 56 73 IPR020892 GO:0003755|GO:0006457
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu1g1994 Pvu-Chr1 45838596 45841491 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu1g1994 22 172 U-box Gene Family AT5G67530 49.007 5.27e-50 167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu1g1994 K12733 - gmx:100786302 328.946
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu1g1994 1 45838596 45841491 Pvu1g1994 1 45838596 45841491 ECH