Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g1989 ATGGAAATTATGCCACCAGGTTATCGTTTCTACCCTACAGAAGAGGAGCTGATTTCGTTCTATCTTCATAATAAACTCGAAGGAGAAAGAGATGACATGAATCGTGTTATTCCAGTGGTTGATATATACGATTACAACCCCACCCAACTCCCACAAATCTCAGGAGAGGCGAGTCTGAGAGACACGGCGGAACAATGGTTTTTTTTCATTCCGAGGCAAGAGAGTGAAGCTCGAGGAGGAAGACCAAGACGTCTGACAACCACAGGGTACTGGAAAGCCACAGGGTCTCCAAATCATGTTTATTCTTCCGACAATCGCATCATAGGCATTAAAAGAACAATGGTTTTCTACAGTGGAAGGGCTCCAAACGGAGCCAAAACTGATTGGAAGATGAACGAGTATACGGCCATCAAAGATTCACAGTTAAGGAAGGAATTCAGTTTATGCAGAGTGTACAAAAAATCGAAGTGTTTGCGTGCGTTTGATAGAAGACCACCAGCGAGGAGGAACAAAGTGAGGTATTTCACTGGTCAAAGTGGTGAAGAGCAAGAAAAGGGTTCGATCTCAACGTCTTTTGATGATCATAAGCATCAAATGTTAGAGAGAAGTGCAACATGTTCTCCAGAGAGTTCTTCCTCCGGAGACCTTGACCATGACCAACCCCTCCTGCACGGTCAGGGAGAAACCCAAATGGATGTCGACAAGGACCCTTTTTTGGATTGGGAGAAAGTGGATTTGTTCTTGGGATCGGAACTATGA 759 0.4453 MEIMPPGYRFYPTEEELISFYLHNKLEGERDDMNRVIPVVDIYDYNPTQLPQISGEASLRDTAEQWFFFIPRQESEARGGRPRRLTTTGYWKATGSPNHVYSSDNRIIGIKRTMVFYSGRAPNGAKTDWKMNEYTAIKDSQLRKEFSLCRVYKKSKCLRAFDRRPPARRNKVRYFTGQSGEEQEKGSISTSFDDHKHQMLERSATCSPESSSSGDLDHDQPLLHGQGETQMDVDKDPFLDWEKVDLFLGSEL* 253
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g1989 252 MobiDBLite consensus disorder prediction 187 202 - -
Pvu1g1989 252 Pfam No apical meristem (NAM) protein 5 135 IPR003441 GO:0003677|GO:0006355
Pvu1g1989 252 PANTHER NAC DOMAIN-CONTAINING PROTEIN 82-RELATED 4 245 - -
Pvu1g1989 252 MobiDBLite consensus disorder prediction 169 236 - -
Pvu1g1989 252 Gene3D NAC domain 13 158 IPR036093 GO:0003677|GO:0006355
Pvu1g1989 252 PANTHER NAC TRANSCRIPTION FACTOR-LIKE PROTEIN 4 245 - -
Pvu1g1989 252 ProSiteProfiles NAC domain profile. 4 154 IPR003441 GO:0003677|GO:0006355
Pvu1g1989 252 SUPERFAMILY NAC domain 4 154 IPR036093 GO:0003677|GO:0006355
Pvu1g1989 252 MobiDBLite consensus disorder prediction 203 217 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu1g1989 Pvu-Chr1 45785779 45787951 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu1g1989 7 244 NAC Transcription Factor Family AT5G22380 47.967 5.67e-73 221
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Pvu1g1989 NAM 2.8e-30 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu1g1989 - - gmx:100777948 415.616