Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g1979 ATGGATATGTCAAATCCTGCAGCCTTTGTCAATGCAGAACTACTGCACTTTTATGTTGGAAGGAGGGTAAGGGCCCTGATGCAGGTTGTGCGATCTGATGGTGGAGTTGTCATTGGAAAATCAACAGACGAGAAACAGGTAGTTGTAAAAGGAACACCCCCTGCTCCTCTTACAACTTTTGTAGAAGTTTTTGGTATTGTTAGCAGTGATAAGTCGATTGCTGCTGAGATATGGACCAATTTTGGTGATTCCATTGATATGTTCAGCTACAATAAGCTCTGTCAGCTTGCAAATGGAGAACTTAGACACCTGTTCCTGTGA 321 0.4268 MDMSNPAAFVNAELLHFYVGRRVRALMQVVRSDGGVVIGKSTDEKQVVVKGTPPAPLTTFVEVFGIVSSDKSIAAEIWTNFGDSIDMFSYNKLCQLANGELRHLFL* 107
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g1979 106 CDD RPA3 6 98 - -
Pvu1g1979 106 PANTHER REPLICATION PROTEIN A 14 KDA SUBUNIT A-RELATED 1 106 - -
Pvu1g1979 106 SUPERFAMILY Nucleic acid-binding proteins 3 98 IPR012340 -
Pvu1g1979 106 Gene3D - 3 106 IPR012340 -
Pvu1g1979 106 PANTHER REPLICATION PROTEIN A 14 KDA SUBUNIT A 1 106 - -
Pvu1g1979 106 Pfam Replication factor A protein 3 3 99 IPR013970 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu1g1979 Pvu-Chr1 45696849 45698654 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu1g1979 1 106 Core DNA Replication Machinery Family AT4G18590 64.151 5.40e-51 154
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu1g1979 K10740 - gmx:100306641 184.882
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu1g1979 1 45696849 45698654 Pvu1g1979 1 45696849 45698654 ECH
Pvu1g1979 1 45696849 45698654 Pvu7g1762 7 40383553 40387926 PCT