Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g1978 ATGCAAAAAATGCCTGGGACAGGGCAGAGAGATGTAGTGGTAAAAAATCCAGAGTCACCAGAGGGAAACAGTGAGCCTGAGAAACCTACAGATTCTGATGAGCAAGTAGACTTTGATGGGGACAATGATCAAGAGGAGACAATGGAGGAGGAAGAAGTTGAGTATGAAGAAGTAGAGGAGGAGGAAGAAGTGGAAGAAGAAGAAGAGGAAGAGGAGGAGGAGGAGGAAGAAGAAGAAGAAGAAGAAGAGACTAAGCCTTCAGATGGTGAAGATGAGACAAGAGTGACACACACTGAAGATGAGAAAAAGAAACATGCTGAGCTTCTTGCGCTTCCCCCTCATGGGTCCGAGGTATACATTGGAGGCATTCCTCAAAAAGTTTCTGAAGAAGATTTGAAGGTATTTTGTCAATCTGTGGGAGAAGTTTCTGAGGTTAGGATAATGAAGGGCAAAGAATCCGGTGAAGCAAAAGGCTATGCTTTTGTGACCTTCAAGACAAAGGATTTGGCATGTAAGGCTATTAAGGAGCTGAACAACTCTGAATTTAAGGGAAAAAGAATAAAGTGCTCAACATCTCAAGCTAAGCACCGGTTGTTCATTGGTAATGTTCCTAGAAATTGGACTGAAGAAAATATGAAGAAAGTTGTTGCAGAGATTGGCCCTGGAGTCATTTCTGTGGAACTGATGAAGGACCCACAGATTTCTGGTCGGAACCGGGGATTTGCTTTTATTGAGTATTACAACAATGCTTGTGCAGAATATTCAAGGCAGAAAATGTCAAACTCAACCTTTAAACTTGGCAGTAATGCTCCAACAGTTAGCTGGGCCGATCCAAGGAATTATGAATCATCTACAAACTCTCAGGTAAAATCATTGTATGTAAAGAACCTTCCAGGAAACATTACTCAGGATCGTCTTAAGGAGCTGTTTGAACATCATGGAAAAATCACAAAAGTGGTTGTTCCTTCTGCTAAAGCCGGCCAAGAAATGAGCAGATATGGTTTTGTGCACTTTGCTGAAAGGTCAAGTGTCATGAAGGCATTGAAGAACACAGAGAAATATGAAATTGATGGACAAACATTGGAGTGTTCACTAGCGAAGCCACAAGCAGATCAGAAGTCATCTGGGGTAGCAAATCAACAGAAGTCAGCCTTACTTCCCACTTATCCACCTCATCTTGGTTATGGTATGGTTGGTGGTGCTTATGGGGCTATAGGTGCAGGATATGGTGCTGCTGGCTTTGCACAACCGTTGATGTATGGTCCTGGACCAACCCCTCCTGGCATGACAATGATACCGATGCTTTTACCAGATGGAAGGATTGGATATGTATTGCAACAACCAGGGTTTCAACAGCCTGCTCCAATGCTGGAATCCCAACATGGGAGGAGTGGCAGCGGTAGTTCAAGCAGTGGGAAACGCAATAATGATAATAACCGCAATCGTGGGTATGGCCGATATCATCCCTACTAA 1473 0.4345 MQKMPGTGQRDVVVKNPESPEGNSEPEKPTDSDEQVDFDGDNDQEETMEEEEVEYEEVEEEEEVEEEEEEEEEEEEEEEEEEETKPSDGEDETRVTHTEDEKKKHAELLALPPHGSEVYIGGIPQKVSEEDLKVFCQSVGEVSEVRIMKGKESGEAKGYAFVTFKTKDLACKAIKELNNSEFKGKRIKCSTSQAKHRLFIGNVPRNWTEENMKKVVAEIGPGVISVELMKDPQISGRNRGFAFIEYYNNACAEYSRQKMSNSTFKLGSNAPTVSWADPRNYESSTNSQVKSLYVKNLPGNITQDRLKELFEHHGKITKVVVPSAKAGQEMSRYGFVHFAERSSVMKALKNTEKYEIDGQTLECSLAKPQADQKSSGVANQQKSALLPTYPPHLGYGMVGGAYGAIGAGYGAAGFAQPLMYGPGPTPPGMTMIPMLLPDGRIGYVLQQPGFQQPAPMLESQHGRSGSGSSSSGKRNNDNNRNRGYGRYHPY* 491
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g1978 490 MobiDBLite consensus disorder prediction 21 35 - -
Pvu1g1978 490 CDD RRM_SF 118 190 - -
Pvu1g1978 490 Gene3D - 280 385 IPR012677 -
Pvu1g1978 490 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 116 194 IPR000504 GO:0003723
Pvu1g1978 490 SUPERFAMILY RNA-binding domain, RBD 112 195 IPR035979 GO:0003676
Pvu1g1978 490 MobiDBLite consensus disorder prediction 36 87 - -
Pvu1g1978 490 Gene3D - 197 277 IPR012677 -
Pvu1g1978 490 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 196 278 IPR000504 GO:0003723
Pvu1g1978 490 SMART rrm2_1 117 190 IPR003954 GO:0003676
Pvu1g1978 490 PANTHER - 16 488 - -
Pvu1g1978 490 MobiDBLite consensus disorder prediction 452 478 - -
Pvu1g1978 490 MobiDBLite consensus disorder prediction 88 103 - -
Pvu1g1978 490 MobiDBLite consensus disorder prediction 452 490 - -
Pvu1g1978 490 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 290 368 IPR000504 GO:0003723
Pvu1g1978 490 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 198 265 IPR000504 GO:0003723
Pvu1g1978 490 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 118 188 IPR000504 GO:0003723
Pvu1g1978 490 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 292 361 IPR000504 GO:0003723
Pvu1g1978 490 PANTHER GEO13361P1-RELATED 16 488 - -
Pvu1g1978 490 Coils Coil 41 85 - -
Pvu1g1978 490 MobiDBLite consensus disorder prediction 1 103 - -
Pvu1g1978 490 Gene3D - 18 196 IPR012677 -
Pvu1g1978 490 SUPERFAMILY RNA-binding domain, RBD 196 369 IPR035979 GO:0003676
Pvu1g1978 490 SMART rrm1_1 197 274 IPR000504 GO:0003723
Pvu1g1978 490 SMART rrm1_1 117 190 IPR000504 GO:0003723
Pvu1g1978 490 SMART rrm1_1 291 364 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu1g1978 Pvu-Chr1 45684999 45691071 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu1g1978 118 455 Eukaryotic Initiation Factors Gene Family AT2G23350 25.135 2.56e-19 89.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu1g1978 K13161 - gmx:100798476 626.706
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu1g1978 1 45684999 45691071 Pvu1g1978 1 45684999 45691071 ECH