Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g1969 ATGGAGTTGAAAGAGATTCAGAGACTCGAAGGTCACACCGATAGGGTTTGGAGCTTGGATTGGAACCCCGCCACCGGACACGCCGGTATTCCTCTCGTCTTCGCTTCTTGCAGCGGCGACAAAACCGTCCGAATCTGGGAGCAGAACCTCTCCTCTGGCCTATGGGCCTGCAAGGCGGTTTTGGATGAAACACACACTCGAACTGTTCGATCTTGTGCTTGGTCACCGTCGGGGAAGCTTTTGGCCACTGGAAGTTTCGACGCCACCACTGCCATTTGGGAAAATGTTGGTGGCGATTTTGAGTGTGTTTCTACTTTGGAGGGACATGAAAATGAAGTGAAGAGTGTGTGTTGGAATGCGTCTGGCACGTTGCTTGCAACTTGTAGTAGAGATAAGTCTGTTTGGATATGGGAAGTGCTGCCTGGGAACGAGTTTGAGTGCGTGTCTGTGCTGCAAGGACATGCGCAGGATGTGAAAATGGTGAAGTGGCATCCCACAGAGGATATCTTATTTTCGTGTAGCTATGATAATAATATTAAGGTTTGGGCGGATGAAGGTGATAGTGACGATTGGCAATGCGTTCAAACGCTTGGGGAACCTAATAATGGACATACTTCCACTGTCTGGGCACTCTCCTTCAATGCGAGTGGTGACAAAATGGTTTCGTGTAGCGATGATCTTACCGTGAAGGTATGGGGAACAGAAAATATAGGGATTCAATCTGGTGGTGGATTTGCACCTTGGAGACATCTTTGCACTCTTACAGGGTATCATGATCGGACAATTTTCTCAGTTCATTGGTCAAGAGAAGGTATCTTTGCCAGTGGAGCCGCTGATGATGCTATACGCCTTTTTGTGGATGACAATGAAAGTCAGGTTGGTGGTCCTCTCTACAAGTTGCTGCTGAAGAAAGAGAAGGCCCATGACATGGATGTAAATTTTGTGCAGTGGAGCCCTGGGGAGAAGCCGGTGCTAGCCTCTGCAAGCGATGATGGGACAATCAAGGTGTGGGAGCTGATATCATAA 1026 0.4844 MELKEIQRLEGHTDRVWSLDWNPATGHAGIPLVFASCSGDKTVRIWEQNLSSGLWACKAVLDETHTRTVRSCAWSPSGKLLATGSFDATTAIWENVGGDFECVSTLEGHENEVKSVCWNASGTLLATCSRDKSVWIWEVLPGNEFECVSVLQGHAQDVKMVKWHPTEDILFSCSYDNNIKVWADEGDSDDWQCVQTLGEPNNGHTSTVWALSFNASGDKMVSCSDDLTVKVWGTENIGIQSGGGFAPWRHLCTLTGYHDRTIFSVHWSREGIFASGAADDAIRLFVDDNESQVGGPLYKLLLKKEKAHDMDVNFVQWSPGEKPVLASASDDGTIKVWELIS* 342
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g1969 341 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 106 139 - -
Pvu1g1969 341 PANTHER CYTOSOLIC IRON-SULFUR PROTEIN ASSEMBLY PROTEIN CIAO1 HOMOLOG-RELATED 2 340 - -
Pvu1g1969 341 SMART WD40_4 298 338 IPR001680 GO:0005515
Pvu1g1969 341 SMART WD40_4 247 286 IPR001680 GO:0005515
Pvu1g1969 341 SMART WD40_4 99 138 IPR001680 GO:0005515
Pvu1g1969 341 SMART WD40_4 54 94 IPR001680 GO:0005515
Pvu1g1969 341 SMART WD40_4 2 47 IPR001680 GO:0005515
Pvu1g1969 341 SMART WD40_4 190 233 IPR001680 GO:0005515
Pvu1g1969 341 SMART WD40_4 144 183 IPR001680 GO:0005515
Pvu1g1969 341 PRINTS G protein beta WD-40 repeat signature 34 48 IPR020472 -
Pvu1g1969 341 PRINTS G protein beta WD-40 repeat signature 125 139 IPR020472 -
Pvu1g1969 341 PRINTS G protein beta WD-40 repeat signature 325 339 IPR020472 -
Pvu1g1969 341 ProSiteProfiles Trp-Asp (WD) repeats profile. 9 47 IPR001680 GO:0005515
Pvu1g1969 341 ProSiteProfiles Trp-Asp (WD) repeats profile. 201 232 IPR001680 GO:0005515
Pvu1g1969 341 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 305 341 - -
Pvu1g1969 341 SUPERFAMILY WD40 repeat-like 3 337 IPR036322 GO:0005515
Pvu1g1969 341 Pfam WD domain, G-beta repeat 5 46 IPR001680 GO:0005515
Pvu1g1969 341 Pfam WD domain, G-beta repeat 146 182 IPR001680 GO:0005515
Pvu1g1969 341 Pfam WD domain, G-beta repeat 101 137 IPR001680 GO:0005515
Pvu1g1969 341 Pfam WD domain, G-beta repeat 58 93 IPR001680 GO:0005515
Pvu1g1969 341 Pfam WD domain, G-beta repeat 191 232 IPR001680 GO:0005515
Pvu1g1969 341 Pfam WD domain, G-beta repeat 306 337 IPR001680 GO:0005515
Pvu1g1969 341 ProSitePatterns Trp-Asp (WD) repeats signature. 325 339 IPR019775 -
Pvu1g1969 341 ProSiteProfiles Trp-Asp (WD) repeats profile. 151 182 IPR001680 GO:0005515
Pvu1g1969 341 ProSiteProfiles Trp-Asp (WD) repeats profile. 305 341 IPR001680 GO:0005515
Pvu1g1969 341 ProSitePatterns Trp-Asp (WD) repeats signature. 125 139 IPR019775 -
Pvu1g1969 341 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 151 182 - -
Pvu1g1969 341 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 201 232 - -
Pvu1g1969 341 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 9 47 - -
Pvu1g1969 341 ProSiteProfiles Trp-Asp (WD) repeats profile. 106 139 IPR001680 GO:0005515
Pvu1g1969 341 Hamap Probable cytosolic iron-sulfur protein assembly protein CIAO1 [CIAO1]. 1 341 IPR028608 GO:0016226|GO:0097361
Pvu1g1969 341 ProSiteProfiles Trp-Asp (WD) repeats profile. 62 94 IPR001680 GO:0005515
Pvu1g1969 341 PANTHER WD40 PROTEIN CIAO1 2 340 IPR028608 GO:0016226|GO:0097361
Pvu1g1969 341 Gene3D - 32 341 IPR015943 GO:0005515
Pvu1g1969 341 CDD WD40 5 338 - -
Pvu1g1969 341 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 62 94 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu1g1969 77 284 U-box Gene Family AT2G33340 26.442 7.47e-13 67.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu1g1969 K24730 - gmx:100778826 682.559
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu1g1969 1 45612640 45618805 Pvu1g1969 1 45612640 45618805 ECH