Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g1962 ATGGTGGTTGAAGAGGGTGAGATGAACTCCCAAGGTGAGGTGGAATCAAGATTCCAACAAGATGCCAACAAGAACCACCATTCCCAGTTCTCACCATCATCCATGGGAAGACAAACATCCATATACTCTCTTACACTGGACGAGTTCCAACACACTCTATGTGAGACTGGCAAAAACTTCGGCTCCATGAACATGGACGAGTTTCTCAGCAGCATCTGGAACGCAGAAGAAAACCAAGCCATAATAACCTCCTCCAACCTTCCTCTTTCCCAACCTTTCACTGACAAAGAAGCAACAAGGCTAAGGAAACAACCAAGCCTACCTCGTCAACCCTCACTGTCTCTCCCTGCACCTCTATGCAGGAAAACCGTGGATGAAGTTTGGTCCCAGATTCAGAAAGAACAGCAAAACAACAATGTTCTGAATAATACCGAGTCTGCCACTCGTCAGCCCACTTTTGATGAGATGACTTTGGAGGATTTTTTGGTCAAGGCTGGGGTGGTTCGGGAACAACCATGTGTACCACCACTGTTGCCTCATCCCTCTCACCACCTCCAGCAGCAGCAGCATTACACGAATAACAACGGTGCAATGCCAGGAATGGGTGGTTCTTCTTTTGTTGGTAGGAATGTTATTGGTGCAGTGAGTAACGTGGTTGCACCGGGTTACCAGGTGGGGGAGGCTTCTGGTGGGTATGCTGGAAATGGTAAGAGGGATGGTGGTGGGGGTTTTCATCAGCAAGGAGTTTGCTTTGGAGGGAGTGGGTATGGGATGGGTCCCACAATGGGAATGGGCGGGCCTGTGAGTCCGGCCAATTCTTCTGATGGAATAGGGAATGATTGTGGGCAGTTTGGGCTTGATATGGGTGGTTTGAGAGGTAGAAAGAGGATCGGAGATGGTCCTGTGGAAAAGGTGGTGGAGAGGAGGCAGAGGAGGATGATCAAGAATAGAGAGTCAGCTGCCAGATCTAGAGCCAGAAAACAGGCATACACGGTTGAATTAGAAGCGGAACTAAACCAGTTGAAAGAAGAGAACACTCAACTTAGACAGGCGCTGGCTGAGATGGAGAGGAGAAGAAAGCAACAGTGTTTTGAAGAATTAAACAATATTAGAGTTCAAACCAACGCTCAGAAAGTAAAAGAGAAAATGAGAACTTTGAGAAGGAACATGAGTTATCCTTAG 1182 0.4763 MVVEEGEMNSQGEVESRFQQDANKNHHSQFSPSSMGRQTSIYSLTLDEFQHTLCETGKNFGSMNMDEFLSSIWNAEENQAIITSSNLPLSQPFTDKEATRLRKQPSLPRQPSLSLPAPLCRKTVDEVWSQIQKEQQNNNVLNNTESATRQPTFDEMTLEDFLVKAGVVREQPCVPPLLPHPSHHLQQQQHYTNNNGAMPGMGGSSFVGRNVIGAVSNVVAPGYQVGEASGGYAGNGKRDGGGGFHQQGVCFGGSGYGMGPTMGMGGPVSPANSSDGIGNDCGQFGLDMGGLRGRKRIGDGPVEKVVERRQRRMIKNRESAARSRARKQAYTVELEAELNQLKEENTQLRQALAEMERRRKQQCFEELNNIRVQTNAQKVKEKMRTLRRNMSYP* 394
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g1962 393 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 311 326 IPR004827 GO:0003700|GO:0006355
Pvu1g1962 393 Gene3D - 306 357 - -
Pvu1g1962 393 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 306 358 IPR004827 GO:0003700|GO:0006355
Pvu1g1962 393 PANTHER CAMP-RESPONSE ELEMENT BINDING PROTEIN-RELATED 5 392 IPR043452 GO:0003700|GO:0045893
Pvu1g1962 393 Pfam bZIP transcription factor 308 357 IPR004827 GO:0003700|GO:0006355
Pvu1g1962 393 MobiDBLite consensus disorder prediction 12 36 - -
Pvu1g1962 393 CDD bZIP_plant_BZIP46 308 362 - -
Pvu1g1962 393 SUPERFAMILY Leucine zipper domain 308 357 IPR046347 GO:0003700|GO:0006355
Pvu1g1962 393 Coils Coil 324 361 - -
Pvu1g1962 393 SMART brlzneu 304 370 IPR004827 GO:0003700|GO:0006355
Pvu1g1962 393 MobiDBLite consensus disorder prediction 1 36 - -
Pvu1g1962 393 Coils Coil 369 389 - -
Pvu1g1962 393 PANTHER ABA RESPONSE ELEMENT-BINDING FACTOR 5 392 IPR029803 GO:0003700|GO:0005634|GO:0009737|GO:0045893
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu1g1962 Pvu-Chr1 45579931 45583092 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu1g1962 1 363 bZIP Transcription Factor Family AT2G36270 50.114 2.16e-104 313
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Pvu1g1962 bZIP_1 8.6e-12 CL0018
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu1g1962 K14432 - gmx:100818567 514.227
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu1g1962 1 45579931 45583092 Pvu1g1962 1 45579931 45583092 ECH
Pvu1g1962 1 45579931 45583092 Pvu7g2361 7 46961712 46964555 PCT