Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g1956 ATGGCGGAAGAACACCGGTGCCAAGCTCCCGAGGGTCACAGACTCTGCGCCAACAACTGCGGCTTCTTCGGTAGCCCCGCCACCATGAATCTCTGTTCCAAATGCTACAGAGACATCCGGCTCAAGGAAGAAGAACAAGCCAAAACCAAATCCACCATCGAAACCGCCCTGTCTTCATCCTCCGCCGCAGCAACAGCAACCGTCGCCTCCACCGCTGTGGTTTCCTTGCCTGCGCCGGTTGAATCCCTCCCTCAACCGGCGGTGGTGACCGCGCCGGACGCGTGCGCACCGCTTCAGGCGAACCGGTGCGGCGCGTGTCGGAAGCGCGTGGGGTTGACCGGGTTCAAGTGCAGGTGTGGAACGACGTTCTGTGGGAGCCACAGGTACCCCGAGAAACACGCGTGTGGGTTCGATTTCAAGGCGGTGGGGAGAGAGGAGATAGCTCGGGCGAATCCGGTGATCAAAGGCGAGAAGCTACGGAGGATTTAA 489 0.6053 MAEEHRCQAPEGHRLCANNCGFFGSPATMNLCSKCYRDIRLKEEEQAKTKSTIETALSSSSAAATATVASTAVVSLPAPVESLPQPAVVTAPDACAPLQANRCGACRKRVGLTGFKCRCGTTFCGSHRYPEKHACGFDFKAVGREEIARANPVIKGEKLRRI* 163
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g1956 162 Gene3D - 1 65 - -
Pvu1g1956 162 ProSiteProfiles Zinc finger AN1-type profile. 97 143 IPR000058 GO:0008270
Pvu1g1956 162 Gene3D - 80 158 IPR035896 -
Pvu1g1956 162 SUPERFAMILY AN1-like Zinc finger 97 157 IPR035896 -
Pvu1g1956 162 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 15 60 - -
Pvu1g1956 162 SMART AN1_Zf_4 103 140 IPR000058 GO:0008270
Pvu1g1956 162 ProSiteProfiles Zinc finger A20-type profile. 10 44 IPR002653 GO:0003677|GO:0008270
Pvu1g1956 162 PANTHER ZINC FINGER A20 AND AN1 DOMAIN-CONTAINING STRESS-ASSOCIATED PROTEIN 3 1 162 - -
Pvu1g1956 162 Pfam A20-like zinc finger 14 37 IPR002653 GO:0003677|GO:0008270
Pvu1g1956 162 PANTHER AN1-TYPE ZINC FINGER PROTEIN 1 162 - -
Pvu1g1956 162 Pfam AN1-like Zinc finger 103 139 IPR000058 GO:0008270
Pvu1g1956 162 SMART A20_3 13 37 IPR002653 GO:0003677|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu1g1956 Pvu-Chr1 45531180 45532573 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu1g1956 1 162 C2H2 Transcription Factor Family AT3G52800 54.118 6.20e-52 161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu1g1956 - - gmx:100527251 280.411
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu1g1956 1 45531180 45532573 Pvu1g1956 1 45531180 45532573 ECH
Pvu1g1956 1 45531180 45532573 Pvu7g2354 7 46883091 46884642 PCT