Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g1950 ATGCAGGTTCAAATTTGGTCAGGTGCAGAAAGTAATAGCCAATTTCGTTTATTGAAAAAGACTCAAATAACATTTGTTGGATCTATTCCAATACGGGGCCCATCATATGCGAACCCTAAACCCTATTTATGTAATTATCTAATTCTTAACCCTTCTTCCATCTTCACACCAAATCGCGCATTCTGCTGCTCTGTACCCGCATTCCGGCGCAAAATGAAGGTCATCGCCGCCTATTTGCTCGCCGTCTTGGGAGGCAACGCTGCCCCTTCCGCCGATGACTTGAGGCTCATCCTTGGATCTGTTGGAGCAGACGCGAATGACGACAATATCAGTAACTTTTTGTCCGAAGTCAAGGGCAAAGACATTACCGAGCTTATCGCCGCCGGTAGGGAAAAGTTGGCCTCAGTGCCTTCCGGCGGTGGAGCCGCCGTTTCCGTGAGCGCCGCTCCCGGAGGTGGAGCGTCTGCTCCGGCAGCTGCCGAATCGAAGAAGGAGGAAAAGGTGGAAGAGAAGGAGGAATCAGATGAC 528 0.5057 MQVQIWSGAESNSQFRLLKKTQITFVGSIPIRGPSYANPKPYLCNYLILNPSSIFTPNRAFCCSVPAFRRKMKVIAAYLLAVLGGNAAPSADDLRLILGSVGADANDDNISNFLSEVKGKDITELIAAGREKLASVPSGGGAAVSVSAAPGGGASAPAAAESKKEEKVEEKEESDD 176
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g1950 176 CDD Ribosomal_P2 72 143 IPR044076 GO:0002182|GO:0003735|GO:0022625
Pvu1g1950 176 Pfam 60s Acidic ribosomal protein 89 176 - -
Pvu1g1950 176 MobiDBLite consensus disorder prediction 147 176 - -
Pvu1g1950 176 Hamap 50S ribosomal protein L12 [rpl12]. 73 176 IPR027534 GO:0003735|GO:0005840|GO:0006414
Pvu1g1950 176 Gene3D - 71 130 IPR038716 -
Pvu1g1950 176 PANTHER 60S ACIDIC RIBOSOMAL PROTEIN FAMILY MEMBER 45 176 IPR044076 GO:0002182|GO:0003735|GO:0022625
Pvu1g1950 176 Coils Coil 160 176 - -
Pvu1g1950 176 PANTHER 60S ACIDIC RIBOSOMAL PROTEIN P2A-LIKE 45 176 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu1g1950 Pvu-Chr1 45471992 45472612 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu1g1950 72 141 Cytoplasmic Ribosomal Protein Gene Family AT2G27710 70.000 3.41e-28 99.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu1g1950 K02943 - gmx:100787024 115.931
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu1g1950 1 45471992 45472612 Pvu1g1950 1 45471992 45472612 ECH