Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g1948 ATGGGTTCATTCTCTGGCACTTGTGAAATAGTTGAAGCAGGGGAGGAGCTAAATACAAGGAAGGCTCCTGGGATTTATCAGTACAATTCTGAGTGTAGCACGTCTGAGAAAAGTCACAAACTTTCGGCGCTGAAACTGGGCTACAAGGATAATCTAGACGATGATATTAATAAGCTATTTGAATCAATTGCTGTTAAGTCTTCATCAAGGGATTTGGGTCTTCTGCAAGACGGTACAAGTCCTAGACTGAAAAGTGCGTTAAAAAAGCCAATTACAATGGGTGTTCCTCGGTCCCCAAGAGTTGGGGCTTCTGGGCCTGTCAATTTGAAGCAAGCATTGAGAGACCTTTGCATATCTAAGGCATCGGAAATGGCCGCTATGAAGCGATTATCAAAGTCATCAGCTTCTCCAAGAATATCTGAAGTTGGGAAGATACATACATTGTACAATTCAGTTGTAGCTGAAACTAGTCTATCTGGGCCTTCCTCTGTTGAAAGCAAAGAGCGTCCAATTGAAGTAGCTCTTGAGCCAGGAAAAAGTAAGTCCCTTCCACTGGTGAAAACCTCTCAATCCTATCAAACTGCCCAAATCGCATCGTCGTCGAGCCGAAACATTCATTCGTCTCGGGAAATTGCTGTTGCTACTACTCAGTATGATTCTGGGATTTCATTGATACAAAGTGATTTGGCATGCCCATCAAGTAAAGTTGGAATTCAATCACAACGAGTGGTACCTGTTGAAACAGAAGAACAAGCATCTGCCTCTTCATCTTCTCTTCGTAATACAATTGGAAGCAAACTAGAAGAGGTGCCCAAAAATGCTTCTTCCCCTAAAAAGTTGGGCACTAAAGCATTTGTGTCAAATAACGGGAAGAAAGGTAGGTTGCAAATAGAATCTTCATCTACTTCTGTAAATGGCAACAGAGTTAACAAACTGCCACGCCATGCCCCCCGCACTGTTAAATCGGTCATCAAGAACAAAACTCTGACTAAGAAGAAACTAAAGGAGGATTCGGGTTCTGCTTTATGTGGTCCTATGCCCAATGAAGTTAAGAAGCTAGTTCCTGGTACGCCTAGGCTAATTTGTGAGAGATGTAGATGTGCTTTAGAAAATACAAGTGAAGAAAAAAACCAAGATGCTGTGGCATTGGACTCTACCAGTCCTGGAAATGGAGTAAGCTTGAATAATGTGCACTCTGGTTCAAATAAACTTGGTTTGGTGTCTACTGGCAGTAATAAAAGCAAAACAGTTGCAAAAGTCAAGAACTCCAAGTTGAAAGAGCAACTTGAATTTTCACAAAGTTCTAAAAGTAGTCAAGGTGAGTACAGTAGTAGTACAAGTACCAGTGATGAGAGCAATGTAAGTGGCTCAAGTCGTAGCACTAGGCCTCACATGTCAAAAGATGTCAGATGGGAAGCCATACGACATGCTCAAATGCAGCATGGAGTCTTGAGCTTAACACACTTCAATCTCTTAAAGAAACTTGGTTGTGGAGACATTGGGACTGTATATCTTGCGGAACTAATTGGCACAAGCTGCTTGTTTGCTATTAAGGTCATGGACAATGAATTTTTGGAAAGGAGAAAGAAAATGCCTAGGGCTCAAACTGAAAGAGAAATTCTAAGGATCCTGGATCATCCTTTTCTTCCAACAATGTATGCACAATTTACATCAGATAATCTATCGTGTCTCGTCATGGAGTATTGTCCAGGAGGAGATCTTCATGTTCTACGGCAGAAGCAGCTTGGTAGATGTTTCTCAGAGCCAGCAGCAAGGTTCTATGTTGCTGAAGTCCTTCTTGCGTTGGAGTACTTGCACATGCTTGGAGTTGTTTACCGTGATTTGAAACCGGAAAACATTCTTGTTCGGGAAGATGGCCACATTATGCTCACAGACTTTGATCTGTCCCTGAGGTGTGCTGTTAACCCAACACTTCTGAAATCGTCTTCTGATGTTGACCCTGCAAAAATTTCTGGTCTAAGTGTGCAATCAAGTTGCATCGAACCATTCTGCATCGAACCATCTTGTCAAGTTCCATGCTTCAGCCCAAGATTCCTACCTGCGGCTGCAAAAACAAGGAAATTAAAAGCTGATCCTTCTGCCCAGGTTAGATCATTGCCACAGCTGGTGGCCGAGCCCACTGATGCAAGATCAAACTCCTTTGTTGGTACACACGAATACTTGGCTCCTGAGATCATCAAAGAAGAGGGACATGGAGCTGCAGTTGACTGGTGGACATTTGGTGTTTTTCTCTATGAACTTTTGTATGGTAGAACACCCTTTAAAGGTTCTAACAATGAAGAAACATTGGCCAACGTAGTGATGCAGAGTCTCAGATTCCCTGACCACCCATTTGTTAGTTTCCAAGCAAAGGATCTGATTAGAGGGTTGTTGGTTAAGGAGCCTGAAAACCGTTTGGGTTCAGAGAAAGGGGCTGCTGAGATTAAACAGCATCCCTTCTTTGAAGGCCTTAACTGGGCCTTAATTCGTTGCACTGTCCCTCCAGAACTTCCAGACTATTATGATTTTGGAGTTTCAGACATGATTAACTCGCAGGTTAAGGGTGCTAAGTACTTAGAGTGTAAAGTAGGAGAGCGTGTAGAATTCGAGTTGTTCTAA 2619 0.4265 MGSFSGTCEIVEAGEELNTRKAPGIYQYNSECSTSEKSHKLSALKLGYKDNLDDDINKLFESIAVKSSSRDLGLLQDGTSPRLKSALKKPITMGVPRSPRVGASGPVNLKQALRDLCISKASEMAAMKRLSKSSASPRISEVGKIHTLYNSVVAETSLSGPSSVESKERPIEVALEPGKSKSLPLVKTSQSYQTAQIASSSSRNIHSSREIAVATTQYDSGISLIQSDLACPSSKVGIQSQRVVPVETEEQASASSSSLRNTIGSKLEEVPKNASSPKKLGTKAFVSNNGKKGRLQIESSSTSVNGNRVNKLPRHAPRTVKSVIKNKTLTKKKLKEDSGSALCGPMPNEVKKLVPGTPRLICERCRCALENTSEEKNQDAVALDSTSPGNGVSLNNVHSGSNKLGLVSTGSNKSKTVAKVKNSKLKEQLEFSQSSKSSQGEYSSSTSTSDESNVSGSSRSTRPHMSKDVRWEAIRHAQMQHGVLSLTHFNLLKKLGCGDIGTVYLAELIGTSCLFAIKVMDNEFLERRKKMPRAQTEREILRILDHPFLPTMYAQFTSDNLSCLVMEYCPGGDLHVLRQKQLGRCFSEPAARFYVAEVLLALEYLHMLGVVYRDLKPENILVREDGHIMLTDFDLSLRCAVNPTLLKSSSDVDPAKISGLSVQSSCIEPFCIEPSCQVPCFSPRFLPAAAKTRKLKADPSAQVRSLPQLVAEPTDARSNSFVGTHEYLAPEIIKEEGHGAAVDWWTFGVFLYELLYGRTPFKGSNNEETLANVVMQSLRFPDHPFVSFQAKDLIRGLLVKEPENRLGSEKGAAEIKQHPFFEGLNWALIRCTVPPELPDYYDFGVSDMINSQVKGAKYLECKVGERVEFELF* 873
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g1948 872 Gene3D Transferase(Phosphotransferase) domain 1 714 830 - -
Pvu1g1948 872 PANTHER PROTEIN KINASE SUPERFAMILY PROTEIN 1 872 - -
Pvu1g1948 872 MobiDBLite consensus disorder prediction 247 286 - -
Pvu1g1948 872 MobiDBLite consensus disorder prediction 373 466 - -
Pvu1g1948 872 ProSiteProfiles Protein kinase domain profile. 489 821 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pvu1g1948 872 MobiDBLite consensus disorder prediction 247 264 - -
Pvu1g1948 872 ProSitePatterns Serine/Threonine protein kinases active-site signature. 610 622 IPR008271 GO:0004672|GO:0006468
Pvu1g1948 872 PANTHER FLIPPASE KINASE 1-RELATED 1 872 - -
Pvu1g1948 872 SMART serkin_6 489 821 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pvu1g1948 872 Gene3D Transferase(Phosphotransferase) domain 1 569 637 - -
Pvu1g1948 872 SUPERFAMILY Protein kinase-like (PK-like) 463 847 IPR011009 -
Pvu1g1948 872 CDD STKc_phototropin_like 487 839 - -
Pvu1g1948 872 Pfam Protein kinase domain 490 639 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pvu1g1948 872 Pfam Protein kinase domain 718 821 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pvu1g1948 872 Gene3D Phosphorylase Kinase; domain 1 487 568 - -
Pvu1g1948 872 MobiDBLite consensus disorder prediction 427 462 - -
Pvu1g1948 872 MobiDBLite consensus disorder prediction 374 418 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu1g1948 Pvu-Chr1 45456926 45462280 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu1g1948 1 872 AGC Kinase Gene Family AT2G36350 50.886 0.0 835
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_RSK-2 Pvu1g1948 Pkinase 2e-35 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu1g1948 - K08286 gmx:100792120 1439.86
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu1g1948 1 45456926 45462280 Pvu11g0933 11 9085525 9088738 ECH
Pvu7g2283 7 46168607 46174315 Pvu1g1948 1 45456926 45462280 ECH
Pvu1g1948 1 45456926 45462280 Pvu1g1948 1 45456926 45462280 ECH
Pvu1g1948 1 45456926 45462280 Pvu7g2283 7 46168607 46174315 PCT