Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g1941 ATGGACTTGCATCTGAAGCAATGGAGAAACCAGCATGAGTCAGAGGAACAACATTCTACAAAGATGCCAAAACTTCTCCCTGAATCCCATCAACAGCCACAAACACAATCATCTGCCTCTGCACTCCCTTTGTTTGTACCTGAACCCAACAGCAAAGTCAGCACCCTGTCAGATTCAACATTAGCAGCTACTAACAGACTTCCCAGGATGGGGAGCTACTTCAGCTTGTCTCAGTGGCAGGAACTTGAGTTGCAGGCTTTGATATTCAGGTACATGTTAGCTGGTGCTGCTGTTCCTCCTGAACTCCTTCAACCAATCAAGAAAAGCCTTCTTCATTCCCCTCACTATTTCCTCCATCACCCTCTCCAACATTACCAACCTGCTTTGCTGCAATCAGGGTACTGGGGTAGAGGAGCGATGGATCCAGAACCAGGGCGGTGCCGGAGAACTGACGGCAAAAAGTGGCGGTGCTCGAGGGACGTGGTGGCTGGGCAAAAGTACTGTGAGCGCCACATGCATCGTGGTAGAAACCGTTCAAGAAAGCCTGTGGAACTACCCACACCAAGTAGTGCTAATTGTGGTGGTAGTGGTGGTGGTGGTGGATCTCAAGGACTAGGTGCTTCATCTTCCATTTCTTCACCGCCGCTAGCTACTGCTTCTCTGAAATCCCCTTTTGATCTTCTTCATCTTAGCGAACGCTCCTCTGGGACCAAGAATGAAGACAAGAGCTTGTTTGAAAACGAAGATCATGTGGGTGGGGATGGCAGAGCAGGTGGGCATATGCTGAGACATTTTTTCGATGATTGGCCAAGATCACTGGAAGACTCTGACAACGTTGAAAACAATGCTGGCCGGATGAACTCGGCCACATGCCTCTCTATTTCTATGCCCGGAAATGCTTCCTCCTCCTCGGATGTATCATTGAAATTGTCCACGGGCTATGGAGAGGACCCGGGCCCAAGAAATGAGAATTTGAATCTCGAGGCAGAGCAACTGCAGTTGAATTGGGCCGGAGGATGGGCCTCGGGTAGTCAAGTGGCTTCAATGGGTGGGCCACTTGCTGAGGCACTCAGATCGTCTACTTCAACTTCATCTCCTACTAGCGTTTTGCATCACTTGCCTCCTGGTTCTGGATCTGAGACCAGCTTCATTAGCGCCTGA 1161 0.5004 MDLHLKQWRNQHESEEQHSTKMPKLLPESHQQPQTQSSASALPLFVPEPNSKVSTLSDSTLAATNRLPRMGSYFSLSQWQELELQALIFRYMLAGAAVPPELLQPIKKSLLHSPHYFLHHPLQHYQPALLQSGYWGRGAMDPEPGRCRRTDGKKWRCSRDVVAGQKYCERHMHRGRNRSRKPVELPTPSSANCGGSGGGGGSQGLGASSSISSPPLATASLKSPFDLLHLSERSSGTKNEDKSLFENEDHVGGDGRAGGHMLRHFFDDWPRSLEDSDNVENNAGRMNSATCLSISMPGNASSSSDVSLKLSTGYGEDPGPRNENLNLEAEQLQLNWAGGWASGSQVASMGGPLAEALRSSTSTSSPTSVLHHLPPGSGSETSFISA* 387
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g1941 386 MobiDBLite consensus disorder prediction 183 215 - -
Pvu1g1941 386 ProSiteProfiles QLQ domain profile. 73 108 IPR014978 GO:0005524|GO:0005634|GO:0006355
Pvu1g1941 386 MobiDBLite consensus disorder prediction 1 38 - -
Pvu1g1941 386 MobiDBLite consensus disorder prediction 24 38 - -
Pvu1g1941 386 MobiDBLite consensus disorder prediction 1 23 - -
Pvu1g1941 386 MobiDBLite consensus disorder prediction 170 215 - -
Pvu1g1941 386 SMART QLQ_2 72 108 IPR014978 GO:0005524|GO:0005634|GO:0006355
Pvu1g1941 386 Pfam QLQ 74 106 IPR014978 GO:0005524|GO:0005634|GO:0006355
Pvu1g1941 386 ProSiteProfiles WRC domain profile. 141 185 IPR014977 -
Pvu1g1941 386 MobiDBLite consensus disorder prediction 343 386 - -
Pvu1g1941 386 Pfam WRC 142 184 IPR014977 -
Pvu1g1941 386 MobiDBLite consensus disorder prediction 355 386 - -
Pvu1g1941 386 PANTHER GROWTH-REGULATING FACTOR 3 11 385 - -
Pvu1g1941 386 PANTHER - 11 385 IPR031137 GO:0005634|GO:0006351|GO:0032502
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu1g1941 Pvu-Chr1 45365410 45368715 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu1g1941 1 373 GRF Transcription Factor Family AT3G52910 51.777 8.66e-96 289
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRF Pvu1g1941 WRC 2.4e-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu1g1941 - - gmx:100814842 600.127
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu1g1941 1 45365410 45368715 Pvu1g1941 1 45365410 45368715 ECH
Pvu1g1941 1 45365410 45368715 Pvu7g2285 7 46182086 46185190 PCT