Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g1939 ATGGCTCAGAGGTACTTGTTGCACCAGCTACTTCAGGAGGATCAAGAGCCCTTTCTTCTAACCAAGTACATTTCCGATAGGCGAAGCCAGATAAAACGGCCTTTCCCCAACAACACTTTGCAAGTCAAGAAACGCAAATCAACCAATCCAAGCGCAAACTTCCCGGGGAATTTGTGCAAAAGTGTTTGTCTTTTTTCCCTCACAGACACCCCAGATTTCAGAAAATCTCCACTCTTCGAATTCGCTTCCGCAGCCAAAAGCCCTTGCAAATCCCCCAACGCTATTTTCCTTCACATCCCTTCGCGAACCGCGTCTATGCTTCTGGAAGCCGCTGTCAGGATCCAGAAACACTCCTCGCCCGCTTCACGGCCCAAAACGAAAGCTCAATCCTTCGGCCTCTTGGGTTCCCTCTACAAGAGACTCACGCAACGGAGCCAGAAAAAGCGCGAGATAGAGGGTGGTGGAAGCGTCAAGGTCTCCGTCAAGGATATTCTTAGGTGGGATTCCTCTGTTGGGAGGAAAAAAAGTTCCAACAAGAAAGAGGATGAAGAAACTGTGAATGTTAATGCGAGTGTGTGTGAAGTGGGGTTTGCGTGTTCTTACAATGGTAGAACTAGTAGTGCTCTTTGGTCAGAGACCAACGAGGATAAATCCCTCGACCTGGAAACCTCAAGTAGCGGCTACTCCGAAGAGATTCACTTCTTAACCAATCACAAAAACTCCACCTGCTTCTGCGAAAGCCCTTTCCGTTTTGTTCTTCAAACCAATTCTCCCTCCTCCGGCCACCACACGCCGGAGTTTCCCTCGCCAAGTCGCCACGCAACTGAGGAGAAAGAAAGCAATGAAGGTGAGAGGGTGAAGAAATTCGAATCAGGGGAAGAAGAGGAGGAAGATAAGGAACAGTGCAGTCCAGTGTGTGTGTTAGACCCACCGTTCGAGGACGATGACGAAGGGCATGGCAACGGTGATGAAGGAGAGGAGGGTCGTTTTGATTTGGAGTGCAGCTATGCGATTGTACAGAGAGTCAAGCAGCAGTTATTGTACAAGCTTCGTAGATTTGAGAAACTGGCAGAGTTGGACCCGGTAGAACTAGAGAGAAGAATGCATGATCAAGACGATGACGAGGATGAAACACTTATGGAAGAGGAAGGTTGTGAAAATGAGGATAAGGAAACTTCACGTAAAGAAAATGACTTTAGAGAGGTAATTTTGCAAGCTCTGTGCCAGTCAAGGATCTACGACAGACAGCAAATCCCAGATGACTTTAAGAAGCTGGTATCTGATATCATAATGGAAGAAGAGAGAGCACTTGATCGCTTGGAAGATAGGGATATGGTGATAAGAAGGATATGCAAGAGGTTGGAATTGTGGAAAGAAGTGGAGTCCAACACAATTGATATGATGATTGAAGATGACTTCTCTAGGGAGGATGGTGAGTGGAAGAAAAATGTAGAGCAGATAAGAAAAATGGCTGGGGAGCTTGAGTGTGCTATCTTCGGTTTTCTGGTGGAGGAATTTTCAGAGGAACTAGTATGCTAA 1539 0.4672 MAQRYLLHQLLQEDQEPFLLTKYISDRRSQIKRPFPNNTLQVKKRKSTNPSANFPGNLCKSVCLFSLTDTPDFRKSPLFEFASAAKSPCKSPNAIFLHIPSRTASMLLEAAVRIQKHSSPASRPKTKAQSFGLLGSLYKRLTQRSQKKREIEGGGSVKVSVKDILRWDSSVGRKKSSNKKEDEETVNVNASVCEVGFACSYNGRTSSALWSETNEDKSLDLETSSSGYSEEIHFLTNHKNSTCFCESPFRFVLQTNSPSSGHHTPEFPSPSRHATEEKESNEGERVKKFESGEEEEEDKEQCSPVCVLDPPFEDDDEGHGNGDEGEEGRFDLECSYAIVQRVKQQLLYKLRRFEKLAELDPVELERRMHDQDDDEDETLMEEEGCENEDKETSRKENDFREVILQALCQSRIYDRQQIPDDFKKLVSDIIMEEERALDRLEDRDMVIRRICKRLELWKEVESNTIDMMIEDDFSREDGEWKKNVEQIRKMAGELECAIFGFLVEEFSEELVC* 513
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g1939 512 Coils Coil 423 443 - -
Pvu1g1939 512 MobiDBLite consensus disorder prediction 367 393 - -
Pvu1g1939 512 MobiDBLite consensus disorder prediction 256 327 - -
Pvu1g1939 512 MobiDBLite consensus disorder prediction 269 294 - -
Pvu1g1939 512 PANTHER OS04G0572500 PROTEIN 1 512 - -
Pvu1g1939 512 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SETD1B-LIKE PROTEIN 1 512 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu1g1939 Pvu-Chr1 45310780 45314198 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu1g1939 1 313 TRM (TON1 Recruiting Motif) Superfamily AT5G03670 45.238 9.83e-63 209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu1g1939 - - gmx:100790018 778.474
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu1g1939 1 45310780 45314198 Pvu1g1939 1 45310780 45314198 ECH
Pvu1g1939 1 45310780 45314198 Pvu7g2286 7 46204630 46208517 PCT