Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g1937 ATGCGTTCCACCAACGCTACATCAAGCAGCGGAGCCTCTAACGGGAACACAGGGCGCCACCCTGTGTACCGCGGAGTGAGGCGTAGGAGTAGCGGAAAATGGGTTTCTGAAATCCGTGAGCCCAGAAAACCTAACAGGATTTGGTTAGGGACATTTACCACCCCTGAAATGGCTGCTATTGCCTATGACGTCGCAGCGCTTGCTCTTAAGGGGAAGGATGCTGAACTCAACTTCCCTAACTCCGCCTCTTCTCTTCCCGTTCCTGCTTCATCGGCTGCTCGTGACATTCAGATGGCTGCGGCCAGTGCTGCAGCCGCTGTCGGAGCAGCTAATGATGCACTAAGTGAAGGAAGCCGAGGAGGGAATGTTTCGGTTTCAATGGCACAAGAGTTTTCAGAGGGAAACTTAAACCACTTTGTGGATGAGGATTTGATCTTTGATATGCCGAATATTCTGGTTAATATGGCTGAAGGAATGCTACTCAGCCCTCCTCGTTTTGACAATTTTGCTGCTACAGACTATGACTACATGGATGAAAATCCTAACCTCTGGGGGTTCCCTTACTAG 567 0.5026 MRSTNATSSSGASNGNTGRHPVYRGVRRRSSGKWVSEIREPRKPNRIWLGTFTTPEMAAIAYDVAALALKGKDAELNFPNSASSLPVPASSAARDIQMAAASAAAAVGAANDALSEGSRGGNVSVSMAQEFSEGNLNHFVDEDLIFDMPNILVNMAEGMLLSPPRFDNFAATDYDYMDENPNLWGFPY* 189
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g1937 188 Pfam AP2 domain 21 71 IPR001471 GO:0003700|GO:0006355
Pvu1g1937 188 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF024 6 187 - -
Pvu1g1937 188 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 6 187 - -
Pvu1g1937 188 PRINTS Ethylene responsive element binding protein signature 23 34 IPR001471 GO:0003700|GO:0006355
Pvu1g1937 188 PRINTS Ethylene responsive element binding protein signature 61 81 IPR001471 GO:0003700|GO:0006355
Pvu1g1937 188 SMART rav1_2 22 85 IPR001471 GO:0003700|GO:0006355
Pvu1g1937 188 MobiDBLite consensus disorder prediction 1 17 - -
Pvu1g1937 188 MobiDBLite consensus disorder prediction 1 33 - -
Pvu1g1937 188 CDD AP2 23 81 IPR001471 GO:0003700|GO:0006355
Pvu1g1937 188 ProSiteProfiles AP2/ERF domain profile. 22 79 IPR001471 GO:0003700|GO:0006355
Pvu1g1937 188 Gene3D AP2/ERF domain 22 80 IPR036955 GO:0003700|GO:0006355
Pvu1g1937 188 SUPERFAMILY DNA-binding domain 22 81 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu1g1937 Pvu-Chr1 45289609 45290175 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu1g1937 10 187 AP2-EREBP Transcription Factor Family AT2G36450 64.481 2.92e-61 187
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Pvu1g1937 AP2 4.6e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu1g1937 - - gmx:100813781 303.523
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu1g1937 1 45289609 45290175 Pvu1g1937 1 45289609 45290175 ECH
Pvu1g1937 1 45289609 45290175 Pvu7g2288 7 46221519 46222906 PCT
Pvu7g2287 7 46214380 46215168 Pvu1g1937 1 45289609 45290175 PCT