Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g1936 ATGGAAATGGAGGACCATCATCATCATCACCATCATCATCAACATCATGACCAGCAGCAACACCAGCAACAGCAGCAGTATGCCATCACTGATCTCAGGCAACTCATGAACGGCCCGAGGGCCACCCATTTCCCCTCCATGCCGCCGCAGCCCAAGGCGGAGCTCTTCCCCGGCGGCCACTCCAACCTGGCCGCCACGCAGCACTTCGAGATGATGATGTTTGGTCGTCAAGTGGCGGACATAATGCCTCGGTGTCTTCATGACTTTGCCTCTACCGATTCCGCCACGAATAATAACAATACGAACATCGCTGCTGCGACTCCCACCACCACCACTAGCGCCTCCACTCCTCCGCTTAGTTGCTTAGAGGGTGAGACCGCAGGATGCATCGGTGGAGACGCCTCCACTGGAAGATGGCCCAGACAAGAGACTCTCACTCTTCTTGAGATCAGATCTCGCCTCGACTCTAAATTCAAAGAGGCTAATCAAAAGGGTCCCCTATGGGATGAAGTTTCTAGGATCATGTCTGAAGAACATGGATATCAAAGGAGCGGGAAGAAGTGCCGGGAGAAGTTTGAGAACCTGTACAAATATTACAAGAAGACAAAGGAGGGAAAAGCAGGAAGGCAGGATGGGAAACATTACAGGTTCTTTCGTCAACTTGAAGCCTTATATGGGGAAAACAGTAACCAAACATCGGTGCCAGAAACCAATTTTGGTAGCAGCAGCCTTCGTTTCAACGCAAACAGCCACAACCCTTCTCAAACAAATCAAGAAATGTTTCACTCCCAGAAGCATTGTGATAGCCTAAGTCTCACCAACTCCACTGATTTGGACACGTCATCATCGGATGACAATGATCAGAATAGCACTGGAGGACTCAAGGACAATGACTCCACGGAGAAGAGGAGAAAGAGGCTGAGCGGTAGAAGCTGGAAGGTGAAGATAAAAGACTTCATTGACTCACAGATGAGGAAGCTGGTGGAGAAGCAAGAGGAGTGGTTGGATAAACTCACAAAGACGCTGGAACAGAAAGAAAAGGAGAGGGTGTTCAGAGAAGAAGAGTGGAGGAGACAAGAAGCTGTGAGGTTGGAGAGGGAACACAAATTTTGGGCTAAAGAGAGAGCATGGATTGAAGCCAGGGATGCTGCTTTAATGGAGGCTTTGCAAAAACTAACAGGAAATGAGATGATAAAGAGTACTCAATCTCCTGAGGGTCGTATGGTAACTGGAATTCAAAACCATAGTGAAAACCTGAATGAAGATGGGAGTGAAATACTAAATAGTACTACTGTCAGAGGTGCTGAAAGCTGGCCAGAATCTGAGATTACTAGGCTTCAACAACTGAGAGCTGAGATGGAGACAAGGTATATGCAAAGTGGGTGTTCAGAAGAGATTATGTGGGAGGAAATAGCAACCAAAATGGCTTGTTTTGGTTACGAAAGGAGTGCTTTAGTGTTCAAAGAGAAATGGGAAAGTAGCAGCAACTATGCAAGGAATGCTAAAGATGGAAACAAGAAGCGCAAGGAAGACCCTAGAGGTTGTTTCTACTTCGATAACAGCGAACAGTCTTCTCTGTATAACCAAGGAGGGGCCTATTGTGATATTAATGATCAAAGGCACGAGAGGAGGCTGCAAAATGATGGCTCTTCGCCTTCGAATTCAAATGTTGGAAATGCAGTTGCTGGTGACAATTGCTTTCCCTTCTTGATGACTGAGAGTGCAAATTTGTGGGAGAACTATAGCTTAAAGGTTAATAAAGCAAGCCAAAACCAGTGA 1779 0.4671 MEMEDHHHHHHHHQHHDQQQHQQQQQYAITDLRQLMNGPRATHFPSMPPQPKAELFPGGHSNLAATQHFEMMMFGRQVADIMPRCLHDFASTDSATNNNNTNIAAATPTTTTSASTPPLSCLEGETAGCIGGDASTGRWPRQETLTLLEIRSRLDSKFKEANQKGPLWDEVSRIMSEEHGYQRSGKKCREKFENLYKYYKKTKEGKAGRQDGKHYRFFRQLEALYGENSNQTSVPETNFGSSSLRFNANSHNPSQTNQEMFHSQKHCDSLSLTNSTDLDTSSSDDNDQNSTGGLKDNDSTEKRRKRLSGRSWKVKIKDFIDSQMRKLVEKQEEWLDKLTKTLEQKEKERVFREEEWRRQEAVRLEREHKFWAKERAWIEARDAALMEALQKLTGNEMIKSTQSPEGRMVTGIQNHSENLNEDGSEILNSTTVRGAESWPESEITRLQQLRAEMETRYMQSGCSEEIMWEEIATKMACFGYERSALVFKEKWESSSNYARNAKDGNKKRKEDPRGCFYFDNSEQSSLYNQGGAYCDINDQRHERRLQNDGSSPSNSNVGNAVAGDNCFPFLMTESANLWENYSLKVNKASQNQ* 593
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g1936 592 PANTHER - 37 583 - -
Pvu1g1936 592 Coils Coil 328 355 - -
Pvu1g1936 592 CDD GT1 438 502 - -
Pvu1g1936 592 MobiDBLite consensus disorder prediction 1 25 - -
Pvu1g1936 592 ProSiteProfiles Myb-like domain profile. 131 196 IPR001005 -
Pvu1g1936 592 MobiDBLite consensus disorder prediction 228 295 - -
Pvu1g1936 592 CDD GT1 138 203 - -
Pvu1g1936 592 PANTHER TRIHELIX TRANSCRIPTION FACTOR PTL 37 583 - -
Pvu1g1936 592 Pfam Myb/SANT-like DNA-binding domain 138 224 IPR044822 -
Pvu1g1936 592 Pfam Myb/SANT-like DNA-binding domain 437 520 IPR044822 -
Pvu1g1936 592 MobiDBLite consensus disorder prediction 228 307 - -
Pvu1g1936 592 Gene3D - 438 500 - -
Pvu1g1936 592 Gene3D - 139 201 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu1g1936 Pvu-Chr1 45258083 45261720 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu1g1936 17 587 Trihelix Transcription Factor Family AT5G03680 45.588 1.54e-145 431
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Pvu1g1936 Myb_DNA-bind_4 1.8e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu1g1936 - - gmx:100813245 955.281
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu1g1936 1 45258083 45261720 Pvu1g1936 1 45258083 45261720 ECH
Pvu1g1936 1 45258083 45261720 Pvu7g2290 7 46249338 46253082 PCT