Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g1933 ATGAATATGGAGAGCACGCGCAGATCGTTGGATAGATCGAGAGAGCCGGGTCCCAAGAAGCCTCGATTGATCGAGGAACTCAGTGCCCGACAGTTACCTCAACGACAGCAAGGGTCTGGGGCAGTTGCTTCGGGGGTGTCTGCGAGGGTTAGGGTAAATGACAGGGACTCCGAAAGCAGCGATTTGGGTCGCGGCGGTGGGTACCACCCGCAGTCTCCCCCTCACGATGAGCTTGTGGCTCAGTATAGGACCGCGCTTGCTGAGCTTACTTTCAATTCGAAGCCGATAATTACGAACTTGACTATTATTGCCGGGGAGAACCAGTCTGCTGCCAAGGCAATTGCCGCCACTGTTTGTGCTAACATTATAGAGGTTCCAAGTGATCAAAAACTGCCATCCCTTTATCTCTTAGACAGTATTGTTAAGAACATCGGGCGGGATTATATAAAATATTTTGCTGTCAGACTACCTGAGGTATTCTGTAAGGCTTACAGACAGGTTGATCCTATTGTCCATTCAAGTATGAAACATCTTTTTGGAACTTGGAAAGGAGTCTTTCCTCCTCAGTGCCTTCAGATGATTGAGAAGGAACTTGGCTTTACACCTGCAGTCAATGGTTCAGCTTCGGTATCTGCTACAGTCAGGAGTGATTTGCAGTCACAACGCCCACCTCATAGTATCCATGTGAATCCCAAGTATTTAGAAAGGCAGCGTCTCCAACAGTCCAGTACGAGTAAAGGAGTTGTTGATGACATGACTGGAGCTTTGTTAAACTCAAACGAGGAGTCAGAGAGGCCAGAGAGAGTTTTGGGTGCTTCTCGACCATGGCTGGATCCTAGGATTAACATGCTTAATAATCAGCACGCACACAGAGATGCATTTAATGATTCTGTTCCTGAGAAGAGCATTGATGGATCATTTGGAGGCAGTCAATATGGTTCTGGCATTTCTAGTAATTTGGTCTCAGGGGCTGGAAGAACTGGAACTAAGCTCATTGATTTAGGGCACGAAAAAACATGGTTCAAAACAGATGGCAGTGAAGCAGAGACCATACCTGGGCAAAAAAATGGTTTCAGTCTCAAGCGTAGTTTTTCAAATCGTGAAGCACCAAAGTCCATTAATTTGGAAGCACATCGTCAGCCAAGACAAAGTATAACTAACATACGGAACAATGTGATGTCAGGTAACTGGAAAAATTCTGAAGAGGAGGAGTTCACGTGGGATGAGATGAACACTGGTTTGACTGATCATGGACCCAATGTGTCCAGCAATTTGAGCACGGATTCATGGATGACAGATGACGAAAATTTGGAAGGTGAAGATCACCTGCATATTCTACGCCCTTATGGGGCAAAGGTTGACAGGGAAATATCCACTGTTAAGAAACAACTGCCTGGGTTTGGTGGCCATCCACCTTCATCATGGCAATTGCAGAAGCACCACACAATTGATAAGTTGAATCTGAAGCCAGGTTACTCAGATGGATTTGTGTCCACTATTAGTGGCTTACCAGCCAACGCAAATTCTTTACCTGTCAAGAAGGGGAACCAATCTTTTACGTCAAAGGCAGTAGTAGGAATGGCAAAAATTGTAGGGCAGCAATTTGATGGGGAGATTGAATCCCCGTCTGGGCAATCACCTTTGCAACGACAGTCTCCATCACTGCCAGGAACAGCATACCACCCTCATTCAATGCAAAATTTGCCCGAGCAAGAAATGCCCCAGAATATTAGAACATCTCAATTTTCGGGAGGTCCAACAAGTCAGCACATTAGAGATCGCTCACCTACCCTTCATCCCATTGTTCAGGTTGGTAACATGCGAAGAACACAGGAAAAGGACATGCAGGGCCCATTATCTTCTGCAACTAAGCTTCAGCAACAGCAGCTCGACTTTTCTCAGACTGAAGTTTCTGCTAAAACTAAGCTGCCCCAGTCTAAAACTTCTTTAACCAAAGAAGTTTCAGAACAGTCAACCAAAAATAATTTGTCATCTGCAGCTGTGAAGAGTGGAATCATCCCCAAGAAATCAATTACCAGTAATCTGGATCCAAGGAAGCATCTATCCAAGTCCGGGGTTCAGCTTCCTCGGTCTGGTAGGTCTTCTCCTACCACAATAATTTCTTCAGGGTCTGCAGTGGCATCACCATCTTTATTAGATCCTCTGCATAAAGATTCGTCTTCAGTGCCAAAAAAACCCCAAGGAAAGGCTGGACAACCACCACAAAAGCTTTCTACTCAACCACCCGCTTCTTCTAATTTGAATGCTGCCAAAAATAATGTAAATCCTATCGCAAACCTTTTAAGCTCATTAGTTGCAAAGGGTTTGATATCTGCAGAAACAGAATCACCGACTATGGTACCAAGCGAACCAAGCGAAGTGCTGAAGGGATCCAAAGATAAAGCTGCAAACATTAGCACCAGTAGCTCAATCCCAGTTACATCAGTTTCTGATTCTGCAGCTGTCCCAGTATCATCTGCCAGAGATGAGGTTGACGCTGCAACAAAATCCTCTCTTCCCTCGGCTCAATCTACTAGCACAAAAATCAGAAATCTCATTGGCTTTGATTTTAAACCTAATGTAATTAGAGAATACCATGAACCGGTTATTAGGGAATTATTGGATGATTTCCCTCATCATTGCAAAATTTGCGGTATTAGGTTTAAACAAGAAGAACAGTATCAGAGACACTTGGAGTGGCATGCCACAAGAGAACATGGTCCAATTAAAGTATCCAGAAGTTGGTATCCTAAGTCAGGTGATTGGATTGCTGGCAAGGTAGAAGAATATTCATCTGAGTTTGAGTTTGCTGACTCGGCTGTTGTAGACAACCAAGAAACAGACAGCAGTCAATTGGATATGATGATTCGAGCAGATGAAAATCAGTGTTTGTGTGTATTGTGTGGCGAGCTATTTGAAGATGTGTACTGTGAAGAAAGGAACGAGTGGATGTTCAAAGGGGCCGTTAATATGAACTACTCGGATATCAATAGTGAGATGGAAAGTAGAAATGCGGGTCCCATCATTCATGCCAAATGCTTATCCGAGAACTCAATTGTCACCAATTTGGATAATGATTAA 3081 0.4414 MNMESTRRSLDRSREPGPKKPRLIEELSARQLPQRQQGSGAVASGVSARVRVNDRDSESSDLGRGGGYHPQSPPHDELVAQYRTALAELTFNSKPIITNLTIIAGENQSAAKAIAATVCANIIEVPSDQKLPSLYLLDSIVKNIGRDYIKYFAVRLPEVFCKAYRQVDPIVHSSMKHLFGTWKGVFPPQCLQMIEKELGFTPAVNGSASVSATVRSDLQSQRPPHSIHVNPKYLERQRLQQSSTSKGVVDDMTGALLNSNEESERPERVLGASRPWLDPRINMLNNQHAHRDAFNDSVPEKSIDGSFGGSQYGSGISSNLVSGAGRTGTKLIDLGHEKTWFKTDGSEAETIPGQKNGFSLKRSFSNREAPKSINLEAHRQPRQSITNIRNNVMSGNWKNSEEEEFTWDEMNTGLTDHGPNVSSNLSTDSWMTDDENLEGEDHLHILRPYGAKVDREISTVKKQLPGFGGHPPSSWQLQKHHTIDKLNLKPGYSDGFVSTISGLPANANSLPVKKGNQSFTSKAVVGMAKIVGQQFDGEIESPSGQSPLQRQSPSLPGTAYHPHSMQNLPEQEMPQNIRTSQFSGGPTSQHIRDRSPTLHPIVQVGNMRRTQEKDMQGPLSSATKLQQQQLDFSQTEVSAKTKLPQSKTSLTKEVSEQSTKNNLSSAAVKSGIIPKKSITSNLDPRKHLSKSGVQLPRSGRSSPTTIISSGSAVASPSLLDPLHKDSSSVPKKPQGKAGQPPQKLSTQPPASSNLNAAKNNVNPIANLLSSLVAKGLISAETESPTMVPSEPSEVLKGSKDKAANISTSSSIPVTSVSDSAAVPVSSARDEVDAATKSSLPSAQSTSTKIRNLIGFDFKPNVIREYHEPVIRELLDDFPHHCKICGIRFKQEEQYQRHLEWHATREHGPIKVSRSWYPKSGDWIAGKVEEYSSEFEFADSAVVDNQETDSSQLDMMIRADENQCLCVLCGELFEDVYCEERNEWMFKGAVNMNYSDINSEMESRNAGPIIHAKCLSENSIVTNLDND* 1027
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g1933 1026 Pfam CID domain 84 192 IPR006569 -
Pvu1g1933 1026 MobiDBLite consensus disorder prediction 739 757 - -
Pvu1g1933 1026 Gene3D - 70 199 IPR008942 -
Pvu1g1933 1026 ProSiteProfiles Zinc finger C2H2 type domain profile. 879 906 IPR013087 -
Pvu1g1933 1026 ProSitePatterns Zinc finger C2H2 type domain signature. 881 901 IPR013087 -
Pvu1g1933 1026 MobiDBLite consensus disorder prediction 1 75 - -
Pvu1g1933 1026 ProSiteProfiles CID domain profile. 74 202 IPR006569 -
Pvu1g1933 1026 MobiDBLite consensus disorder prediction 538 594 - -
Pvu1g1933 1026 CDD CID_Pcf11 79 189 - -
Pvu1g1933 1026 MobiDBLite consensus disorder prediction 537 600 - -
Pvu1g1933 1026 MobiDBLite consensus disorder prediction 214 247 - -
Pvu1g1933 1026 PANTHER RNA POLYMERASE II-BINDING DOMAIN PROTEIN 3 1022 - -
Pvu1g1933 1026 SUPERFAMILY ENTH/VHS domain 74 202 IPR008942 -
Pvu1g1933 1026 MobiDBLite consensus disorder prediction 633 757 - -
Pvu1g1933 1026 MobiDBLite consensus disorder prediction 781 801 - -
Pvu1g1933 1026 MobiDBLite consensus disorder prediction 1 26 - -
Pvu1g1933 1026 SMART 558neu5 77 199 IPR006569 -
Pvu1g1933 1026 PANTHER PRE-MRNA CLEAVAGE COMPLEX II 3 1022 IPR045154 GO:0000993|GO:0003729|GO:0006369|GO:0006378|GO:0006379
Pvu1g1933 1026 MobiDBLite consensus disorder prediction 694 715 - -
Pvu1g1933 1026 MobiDBLite consensus disorder prediction 633 668 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu1g1933 Pvu-Chr1 45192295 45198674 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu1g1933 31 236 C2H2 Transcription Factor Family AT4G04885 51.456 3.12e-54 201
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Pvu1g1933 CID 3.5e-12 CL0020
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu1g1933 K14400 - gmx:100788958 1590.09
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu1g1933 1 45192295 45198674 Pvu1g1933 1 45192295 45198674 ECH
Pvu1g1933 1 45192295 45198674 Pvu7g2294 7 46274488 46282303 PCT