Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g1930 ATGTCTTCAGACACAAAGAAAAGCCGTGGCCGTCAGAAGATCGAGATGAAGAAAATGAGCAACGAGAGCAACCTCCAAGTCACCTTCTCCAAGCGCCGTACCGGACTCTTCAAGAAAGCCAGTGAGCTTTGCACTCTCTGTGCTGCCGACGTGGCACTTGTTGTGTTCTCCCCCGGAGAGAAGGTCTTCTCCTTCGGTCACCCTAACGTCGACGCCGTGACTGACAGCTACCTCGCACGTCCCCCACCGCAGGACATGGGCACCATGCAGTTCATCGAGGCTCACCGCCTGGCCAACGTGTGTGACCTCAACGCGCAGCTCACTCAGATCAACGCCCAATTGGAGGCGGGAAAGCAGCGCGGGGAGGAGCTGAATCGCATGAAGAAGGACTCACAGTCCAAGCAATGGTGGGTTCAGCCCATCGAGGAAATGAGCCCAGCCCAGATGGAGCAGTACAAGGCGTCCTTGGAGGAGCTGAAGAAACTGGTTGCGCGTCTTGCTGAGAGGGCCATGCTTGAGAGTGCAACAAACCAGACTTGTCAGTTTTTTCCTGGGGCTCCTTCCTCTTCCAACTCTTCCAATCTGCTACATCACCCGCACCCTCCTCAGGTGTTCCCACAACCGCTGATTCAGCCACCCATGCTTCAGAACTTCATGTTTCCTGATGGGAGCATCGTAAGCCACCATGGGTTTAATCACATGGAAGTGGGAGGATATGCACCTGGACCTGCTGGTGTTTTCTTTTGA 747 0.5489 MSSDTKKSRGRQKIEMKKMSNESNLQVTFSKRRTGLFKKASELCTLCAADVALVVFSPGEKVFSFGHPNVDAVTDSYLARPPPQDMGTMQFIEAHRLANVCDLNAQLTQINAQLEAGKQRGEELNRMKKDSQSKQWWVQPIEEMSPAQMEQYKASLEELKKLVARLAERAMLESATNQTCQFFPGAPSSSNSSNLLHHPHPPQVFPQPLIQPPMLQNFMFPDGSIVSHHGFNHMEVGGYAPGPAGVFF* 249
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g1930 248 PANTHER MADS BOX PROTEIN 8 184 - -
Pvu1g1930 248 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL62 8 184 - -
Pvu1g1930 248 PRINTS MADS domain signature 11 31 IPR002100 GO:0003677|GO:0046983
Pvu1g1930 248 PRINTS MADS domain signature 31 46 IPR002100 GO:0003677|GO:0046983
Pvu1g1930 248 PRINTS MADS domain signature 46 67 IPR002100 GO:0003677|GO:0046983
Pvu1g1930 248 MobiDBLite consensus disorder prediction 1 18 - -
Pvu1g1930 248 SMART madsneu2 9 68 IPR002100 GO:0003677|GO:0046983
Pvu1g1930 248 CDD MADS_MEF2_like 10 78 IPR033896 GO:0000977|GO:0045944
Pvu1g1930 248 Gene3D - 21 88 IPR036879 GO:0003677|GO:0046983
Pvu1g1930 248 MobiDBLite consensus disorder prediction 1 22 - -
Pvu1g1930 248 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 18 65 IPR002100 GO:0003677|GO:0046983
Pvu1g1930 248 Coils Coil 149 169 - -
Pvu1g1930 248 ProSiteProfiles MADS-box domain profile. 9 69 IPR002100 GO:0003677|GO:0046983
Pvu1g1930 248 SUPERFAMILY SRF-like 10 84 IPR036879 GO:0003677|GO:0046983
Pvu1g1930 248 Gene3D - 89 182 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu1g1930 Pvu-Chr1 45137551 45138297 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu1g1930 5 190 Type I MADS-box Gene Family AT5G60440 52.381 1.12e-61 194
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Pvu1g1930 SRF-TF 1.1e-23 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu1g1930 - - gmx:100794751 335.495