Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g1915 ATGGATTGGCATTGCACCACAAAACCATTTGTTCCTCAGCCAGAGACCTTAAGCTTCTTCTACAACTATAACAACAACCCATATCCAGGAGTGGAAGTGAAACAAGCGACATTGTTGGAGACAGGAGAAAGGTCGAATCCGGCAATGGACAACGGAAGCAAAGAGAAGAAGAAGCGGTTAACAAGCAAGCAGATAGAGTTATTGGAGAGGAGCTTCCAGGAGGAAATAAAGTTAGACCCTGAAAGGAAGATGAAGCTTTCGAGGGAACTATGCCTCCAGCCACGCCAAATCGCTGTTTGGTTCCAAAATAGACGTACAAGGTGGAAAACCAAACAGCTTGAGCACTTGTACGATGTTCTCAAACACCAATATGATGTCATCTCCAACGAAAAGCAGAAGCTTCAAGAAGAGGTTATGAAGTTGAAGGCAATGCTAGGCAAAGAGCAAGGTTTTGGGATGCAAAGATTGGGCGGTTATCCAGAAATATCTGGAGAAGAAACGGTAGAAAGCACGTCAGAGGGTCTAAGGGGTTCTAATAACAAGGCATGGGGAAAGAGTAACATTGAGCAGGTTGCAGATGAGGGCCTTTGTTCTTTGAGTGTGGAGGATTATAACACTGTTTCACTGCCTCTCTGCCACTGGCCTATTGTGCCTTATTAG 660 0.4485 MDWHCTTKPFVPQPETLSFFYNYNNNPYPGVEVKQATLLETGERSNPAMDNGSKEKKKRLTSKQIELLERSFQEEIKLDPERKMKLSRELCLQPRQIAVWFQNRRTRWKTKQLEHLYDVLKHQYDVISNEKQKLQEEVMKLKAMLGKEQGFGMQRLGGYPEISGEETVESTSEGLRGSNNKAWGKSNIEQVADEGLCSLSVEDYNTVSLPLCHWPIVPY* 220
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g1915 219 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 1 216 IPR045224 GO:0003700
Pvu1g1915 219 SUPERFAMILY Homeodomain-like 45 113 IPR009057 -
Pvu1g1915 219 Coils Coil 117 144 - -
Pvu1g1915 219 Pfam Homeobox associated leucine zipper 111 145 IPR003106 GO:0006355|GO:0043565
Pvu1g1915 219 ProSitePatterns 'Homeobox' domain signature. 86 109 IPR017970 GO:0000981|GO:0006355
Pvu1g1915 219 CDD homeodomain 54 112 IPR001356 GO:0003677
Pvu1g1915 219 ProSiteProfiles 'Homeobox' domain profile. 51 111 IPR001356 GO:0003677
Pvu1g1915 219 PANTHER HOMEOBOX LEUCINE ZIPPER PROTEIN 1 216 - -
Pvu1g1915 219 SMART HOX_1 53 115 IPR001356 GO:0003677
Pvu1g1915 219 Gene3D - 48 118 - -
Pvu1g1915 219 Pfam Homeodomain 54 109 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu1g1915 Pvu-Chr1 44995510 44997206 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu1g1915 42 145 Homeobox Transcription Factor Family AT2G36610 59.821 9.63e-40 133
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Pvu1g1915 Homeodomain 2.5e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu1g1915 - - vra:106757543 376.326
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu1g1915 1 44995510 44997206 Pvu1g1915 1 44995510 44997206 ECH
Pvu7g2310 7 46465483 46467655 Pvu1g1915 1 44995510 44997206 PCT