Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g1905 ATGGCGGTTCCTCCGTCGGTTGCCGCCTCTCCGGCGTCGCTCTACGTCGGTGACCTCCATCCCGACGTTTCCGACATTCACCTCGTCGACGCATTCTCCGAGTTCAAGAGCCTCACCTCCGTTCGCGTCTGCAAAGACTCCTCCACCGGCAAATCCCTCTGTTATGGCTACGTCAACTTTGTTTCTCATCAGGACGCGATTCTTGCAATCGAGACTAAGAATCATACGTTGCTGAATGGAAAAATGATGAGGGTGATGTGGTCGCGTCGCGATCCTGATGCGAGGAAGAGCACTATTGGGAACTTGTTTGTCAAGTACATTCCTGAATCGATAGATAATGCTGGACTGCAAGATATATTCAAGAAATACGGGAATATTTTGTCTAGCAAAGTTGTCACGTCTGACGATGGAAAGAGCAAAGGATACGGGTTTGTTCAATTTGAATCGGAAGAATCTTCACATGTTGCTATAGAGAAGCTGAATGGCTCTACTGTTGGTGATAAACAGTTATATGTTGGGAAGTTTGTAAAAAAAAGTGATCGCATTTTGCCTGGCGCGGATGCTAGATATACAAACTTGTACGTGAAGAATTTGGACTTGGATATTACAGAAGCAAAACTGAAGGAGAAGTTTTCCTCTTTTGGGAAAATTGTTAGCTTGGCTATTGCAAAGGACCACTATGGGATGACCAAGGGTTTTGGCTTTGTGAACTATGATAACCCAGATGATGCTAAAAAGGCAATGGAAGAAACGAATGGATCACAATTAGGTTCTAAGATTCTGTATGTAGCCAGAGCGCAAAAGAAAGCTGAGCGCGTGCAGATCTTGCACCACCAATTTGAGGAGAAACGGAAGGAACAAATATTGAAATACAAGGGATCAAACGTTTATGTGAAAAACATTGATGACAATGTAAGTGACGAAGAACTAAGCGATCATTTTAGTGCATGTGGCACTATAACTTCTGCAAAAGTTATGCAAGATGAGAAAGGGATAAGTAAAGGATTTGGCTTTGTCTGCTTCTCCACTCCTGAGGAGGCCAATAAAGCTGTGAACACTTTTCATGGATTCATGTTTCATGGTAAACCACTGTATGTTGCCCTTGCTCAGCGGAAAGAGGATAGGAAAGCACAATTGCAGCATCAATACACACAGCAAATAGCAGCAGGACTGGCCGGACCTTCGACTACCATTATCACTGGTGGATATCCTCCTTATTATTATCCAGCTACTGGTGTTATTTCACATGTGCCTCCTCGAGCTGGGCTGATGTATCAACCTCTTGCATTGAGGCCGGGATGGGGACCTAATGGCTTTGCATCCCCTGCTAGATCATTTCAACAATCATCTGTTCCCGCAGTTTCTAACAATAATAGGCAGAATAGGCAAAACAGGGGCAGGTTGAATGGGCATTCAGCATCACTGGGTAATACTAACTCTGGTACTTATTTGCAACAAGCCCAGCAGACTTCTCAGTCCATGATCTCTCCAAGAGAGTCAAGTTTTCATCAGAGAACTGGACAGCCTAAGTACATATCCAGTGGACGCAAGCGTGACATGGAAAAAGGATCTGGTTCAAATTCTGGTAGAGGGTGCCAGGGGCCAGAAATGCTGCATAGCTTGCTTGCTGGTGCTGCTCCCGAGCAGCAAAAAGAGATATTGGGAGAGCATCTTTATATGCTTGTTCAGAAACTAAAGCCTAGCCTAGCGGCAAAAATAACAGGGATGCTTTTGGAGATGGACAATGGAGAATTGTTGGATCTCCTGGAATCGCCGGAGTCTCTTTCTGCAAAGGTGGAAGAAGCTGTGCAAGTGCTTAAGAATTCTGAGACCAAAGTTTCTGGCCAGGACGTACTTCATTCAAATTACCTTTCAGCTGAAGTTGCAGTGAACTGA 1896 0.4467 MAVPPSVAASPASLYVGDLHPDVSDIHLVDAFSEFKSLTSVRVCKDSSTGKSLCYGYVNFVSHQDAILAIETKNHTLLNGKMMRVMWSRRDPDARKSTIGNLFVKYIPESIDNAGLQDIFKKYGNILSSKVVTSDDGKSKGYGFVQFESEESSHVAIEKLNGSTVGDKQLYVGKFVKKSDRILPGADARYTNLYVKNLDLDITEAKLKEKFSSFGKIVSLAIAKDHYGMTKGFGFVNYDNPDDAKKAMEETNGSQLGSKILYVARAQKKAERVQILHHQFEEKRKEQILKYKGSNVYVKNIDDNVSDEELSDHFSACGTITSAKVMQDEKGISKGFGFVCFSTPEEANKAVNTFHGFMFHGKPLYVALAQRKEDRKAQLQHQYTQQIAAGLAGPSTTIITGGYPPYYYPATGVISHVPPRAGLMYQPLALRPGWGPNGFASPARSFQQSSVPAVSNNNRQNRQNRGRLNGHSASLGNTNSGTYLQQAQQTSQSMISPRESSFHQRTGQPKYISSGRKRDMEKGSGSNSGRGCQGPEMLHSLLAGAAPEQQKEILGEHLYMLVQKLKPSLAAKITGMLLEMDNGELLDLLESPESLSAKVEEAVQVLKNSETKVSGQDVLHSNYLSAEVAVN* 632
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g1905 631 SUPERFAMILY RNA-binding domain, RBD 291 382 IPR035979 GO:0003676
Pvu1g1905 631 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 294 371 IPR000504 GO:0003723
Pvu1g1905 631 Coils Coil 263 283 - -
Pvu1g1905 631 Gene3D - 2 98 IPR012677 -
Pvu1g1905 631 CDD RRM2_I_PABPs 99 174 IPR045305 -
Pvu1g1905 631 PANTHER POLYADENYLATE-BINDING PROTEIN 531 616 - -
Pvu1g1905 631 PANTHER POLYADENYLATE-BINDING PROTEIN 5 516 - -
Pvu1g1905 631 Gene3D - 289 389 IPR012677 -
Pvu1g1905 631 MobiDBLite consensus disorder prediction 441 511 - -
Pvu1g1905 631 CDD RRM4_I_PABPs 293 371 - -
Pvu1g1905 631 SUPERFAMILY PABC (PABP) domain 538 617 IPR036053 GO:0003723
Pvu1g1905 631 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 100 177 IPR000504 GO:0003723
Pvu1g1905 631 SUPERFAMILY RNA-binding domain, RBD 12 179 IPR035979 GO:0003676
Pvu1g1905 631 TIGRFAM PABP-1234: polyadenylate binding protein, human types 1, 2, 3, 4 family 12 607 IPR006515 GO:0003723
Pvu1g1905 631 SUPERFAMILY RNA-binding domain, RBD 184 274 IPR035979 GO:0003676
Pvu1g1905 631 MobiDBLite consensus disorder prediction 439 534 - -
Pvu1g1905 631 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 12 90 IPR000504 GO:0003723
Pvu1g1905 631 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 191 268 IPR000504 GO:0003723
Pvu1g1905 631 PANTHER RNA BINDING PROTEIN 531 616 - -
Pvu1g1905 631 PANTHER RNA BINDING PROTEIN 5 516 - -
Pvu1g1905 631 Gene3D - 100 180 IPR012677 -
Pvu1g1905 631 Pfam Poly-adenylate binding protein, unique domain 542 606 IPR002004 GO:0003723
Pvu1g1905 631 Gene3D - 533 612 - -
Pvu1g1905 631 SMART poly_2 546 609 IPR002004 GO:0003723
Pvu1g1905 631 Gene3D - 181 286 IPR012677 -
Pvu1g1905 631 ProSiteProfiles Poly(A)-binding protein C-terminal (PABC) domain profile. 534 611 IPR002004 GO:0003723
Pvu1g1905 631 SMART rrm2_1 295 367 IPR003954 GO:0003676
Pvu1g1905 631 SMART rrm2_1 101 173 IPR003954 GO:0003676
Pvu1g1905 631 SMART rrm2_1 192 264 IPR003954 GO:0003676
Pvu1g1905 631 CDD RRM1_I_PABPs 13 92 - -
Pvu1g1905 631 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 296 364 IPR000504 GO:0003723
Pvu1g1905 631 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 14 82 IPR000504 GO:0003723
Pvu1g1905 631 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 102 170 IPR000504 GO:0003723
Pvu1g1905 631 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 193 260 IPR000504 GO:0003723
Pvu1g1905 631 SMART rrm1_1 192 264 IPR000504 GO:0003723
Pvu1g1905 631 SMART rrm1_1 101 173 IPR000504 GO:0003723
Pvu1g1905 631 SMART rrm1_1 13 86 IPR000504 GO:0003723
Pvu1g1905 631 SMART rrm1_1 295 367 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu1g1905 Pvu-Chr1 44862389 44867696 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu1g1905 12 629 Eukaryotic Initiation Factors Gene Family AT2G36660 52.979 0.0 619
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu1g1905 K13126 - gmx:100779547 1042.34
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu1g1905 1 44862389 44867696 Pvu1g1905 1 44862389 44867696 ECH
Pvu1g1905 1 44862389 44867696 Pvu7g2319 7 46541051 46545475 PCT