Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g1900 ATGGACACAGTTCTGGTACCTCCTTGGCTTGAGCAGCTTCTTCACACACCTTTCTTCAATGTTTGTCGAATTCACGCAGACGCAGCAAGGAGTGAATGTAACATGTTTTGTCTAGATTGCAGTGGCGAAGCCTTCTGTTTCTATTGTCGTTCTTCTCGACACAAAGATCATGGAGTGATTCAGATAAGAAGATCTTCGTATCATGATGTAGTGAGGGTGGGTGAAATTGAGAGGGTGTTGGACATAAGTGGAGTGCAGACATATGTGATAAACAGTGCTCGAGTTTTGTTCTTGAATGTGAGGCCTCAACCAAAATCTGGAAAAGGAGTAGCTCACATTTGTGAGATTTGTGGAAGGAGCCTCTTGGACCCATTTCGCTTCTGTTCTTTGGGATGTAAGCTTGAAGGAATAAAGAAAAATGGGGATTCAAGCTTTGGTTTGGATGGTAGGAATAATGATGAATTGACAATGGAGACTACTACTACTACTTCAACTTCAAGAGGATCAATCTCATCAAGACAGCAAGAAGAAGGATTGCGTGAAGGTTCAACACAAGACATGTATCCAGCCACACCTTCAAACGCAAGGAGAAGAAAAGGAATTCCTCATAGAGCTCCCTTCGCCTCCTAA 630 0.4286 MDTVLVPPWLEQLLHTPFFNVCRIHADAARSECNMFCLDCSGEAFCFYCRSSRHKDHGVIQIRRSSYHDVVRVGEIERVLDISGVQTYVINSARVLFLNVRPQPKSGKGVAHICEICGRSLLDPFRFCSLGCKLEGIKKNGDSSFGLDGRNNDELTMETTTTTSTSRGSISSRQQEEGLREGSTQDMYPATPSNARRRKGIPHRAPFAS* 210
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g1900 209 MobiDBLite consensus disorder prediction 145 178 - -
Pvu1g1900 209 Pfam PLATZ transcription factor 63 134 IPR006734 -
Pvu1g1900 209 PANTHER PLATZ TRANSCRIPTION FACTOR FAMILY PROTEIN 2 208 - -
Pvu1g1900 209 SUPERFAMILY B-box zinc-binding domain 16 63 - -
Pvu1g1900 209 PANTHER PLATZ TRANSCRIPTION FACTOR FAMILY PROTEIN 2 208 - -
Pvu1g1900 209 MobiDBLite consensus disorder prediction 143 209 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu1g1900 Pvu-Chr1 44835231 44836774 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF PLATZ Pvu1g1900 PLATZ 5.6e-28 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu1g1900 - - gmx:100803076 369.392
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu1g1900 1 44835231 44836774 Pvu1g1900 1 44835231 44836774 ECH
Pvu1g1900 1 44835231 44836774 Pvu7g2324 7 46579686 46581759 PCT