Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g1897 ATGATGGGATTCAACAGAAACCTCTTCTGGCTTTCTGGCTTTGTGATTTTTCTCTTTTATATCTCATTTGTTCTTTATTCCACTTCACCTTCCCCGAGCAATAACACGGCCATTAGTCCTCAAGATAGTTTCAGTTTCCAGCTTGGTATATTTAGCAAGATTATAAAGCTTAGTGGCGCTCAAGACTTGGTATCTCTGATAACAAGTATAGCTAGGAGGAGACATCGTCACCATCATCATCATCACCGGGGAAGACATAAGGAAAAATGTGACGGGGCCAAGTGGGATTCCAGGCTTATTCAACACTATAACGTGAGTCTTGTTTTCACGGTTGATTTGAAGGGCTGTGCTAACTTCAGTAGCGTTCAAAAAGCTGTTGATGCTGTTCCTGAATCTAGCTCTGATACCACCCTTATCATAATCGATTCTGGTACATACAGGGAGAAGGTAGTTGTGCAAGGCAACAAAACAAACTTAATAATTCAAGGTCAAGGGTATCTGAATACAATCGTTGAATGGAACGACACCGCCAATTCCACCGGCGGAACTTCATACAGCTACTCATTTGCCATCTTTGCTTCTATGTTCACTGCTTACAACATCAGCTTTAAGAACACGGCTCCACCACCGTCACCAGGAGTGGTTGGGGCACAAGCAGTGGCACTGAGAGTTACCGGTGATAAAGCAGCTTTCTATGGATGTGGATTTTATGGTGCGCAGGATACATTGAATGATGATGGTGGAAGACATTACTTTAAAGAATGCTTAATCCAAGGATCCATTGATTTCATATTTGGAAATGCCAGATCCCTTTATGAGGATTGTACCATAAACTGTGTAGCAAAAGAAGAGAAGGATGAGATTAGCGGGTCGATCACCGCTCAAGGGAGGAAATCGATGGATGAAGAAAGTGGGTTCTCCTTTGTGAATTGTAGCATTGTTGGGAGTGGAAGAGTGTGGCTTGGAAGAGCTTGGGGACCCTATGCCACTGTCATCTTCTCAACAACATACATGTCTGATGTCATAGCCCCTGAAGGATGGAATGATTGGAGAGATCCCTCTAGAGACCAGAGCGTGTTCTTTGGGGAGTACCGTTGCCATGGACCTGGAGCAAATTATGAATCTAGAGTCTCTTATGCTAAGCAACTCAGGGATAACGAAGCAAACTCCTACATGGATATTTCCTACATTGATGGAAATGATTGGCTTCTTAGTTATCCTCAAAGCTATGTTAACCCTTCATATATCTAA 1251 0.4293 MMGFNRNLFWLSGFVIFLFYISFVLYSTSPSPSNNTAISPQDSFSFQLGIFSKIIKLSGAQDLVSLITSIARRRHRHHHHHHRGRHKEKCDGAKWDSRLIQHYNVSLVFTVDLKGCANFSSVQKAVDAVPESSSDTTLIIIDSGTYREKVVVQGNKTNLIIQGQGYLNTIVEWNDTANSTGGTSYSYSFAIFASMFTAYNISFKNTAPPPSPGVVGAQAVALRVTGDKAAFYGCGFYGAQDTLNDDGGRHYFKECLIQGSIDFIFGNARSLYEDCTINCVAKEEKDEISGSITAQGRKSMDEESGFSFVNCSIVGSGRVWLGRAWGPYATVIFSTTYMSDVIAPEGWNDWRDPSRDQSVFFGEYRCHGPGANYESRVSYAKQLRDNEANSYMDISYIDGNDWLLSYPQSYVNPSYI* 417
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g1897 416 Gene3D - 103 410 IPR012334 -
Pvu1g1897 416 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 13 410 - -
Pvu1g1897 416 PANTHER PECTINESTERASE 14-RELATED 13 410 - -
Pvu1g1897 416 SUPERFAMILY Pectin lyase-like 106 405 IPR011050 -
Pvu1g1897 416 ProSitePatterns Pectinesterase signature 2. 257 266 IPR033131 -
Pvu1g1897 416 Pfam Pectinesterase 111 400 IPR000070 GO:0030599|GO:0042545
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu1g1897 Pvu-Chr1 44781655 44786519 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu1g1897 109 403 Carbohydrate Esterase AT1G05310 56.040 2.48e-120 353
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu1g1897 - - vun:114181275 735.717
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu1g1897 1 44781655 44786519 Pvu7g2180 7 45075831 45081093 PCT