Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g1881 ATGGCTTTCCCTTGGGGAGCCCTCTTGACCTCAACATTACTTTTCTCATTTCCTATTATTCATGCAGCTGATGACAGTACTGACAAATATAATAAGAAAGGTGACATCAGAAAGCATCGTCCTCTTTTTAAGCCTACTGTATGGAAGCAAGCTCATGCTACCTTCTATGAGGGAGGCTCTGAAACATTTGGTGGAGCTTGTGGGTATGGTGATGTGGTTAAAGATGGCTATGGCCTAGACACGACGGCATTGAGTTCAATTTTGTTCAAGGAGGGACAGACATGTGGCGCATGTTACGAGATCAAATGCACAAAATCTGGTGTGGGATGCAAGGCAGGGAAATCCTCTATTTTGGTGACGGCTACCAACCTTTGCCCACCAAACTATGATCTGCCAAGTGATAATGGAGGATGGTGCAACCCACCACGCGAACACTTTGATTTGGCCAAACCTGCATATCTCAAAATTGCAGAGTATAAGGCTGGCATCGTCCCCATCCAATATCGCAGGGTACCGTGCAAGAAGGAAGGAGGGATTCGGTTCACCATCACTGGGAATCCTTATTTCAATCTAGTATCAGTGTGGAATGTTGGAGGTTCTGGGGAGATCACAGAAGTGCTGGTGAAGGGTGAAGAGAAAGTCAAGAATTGGACAAATTTGAAGAGAAATTGGGGTCAGAAATGGGAAAGTGATGAGATGTTAGTGGGAGAGACATTGTCTTTCAGAGTGAAAGCTAGTGATGGAAGGTACACTACCTCTCTCAGGATTGCTCCCAAGGATTGGAAATTTGGTCAAACTTTTGTAGGCAAAAACTTCCCTTAA 822 0.4477 MAFPWGALLTSTLLFSFPIIHAADDSTDKYNKKGDIRKHRPLFKPTVWKQAHATFYEGGSETFGGACGYGDVVKDGYGLDTTALSSILFKEGQTCGACYEIKCTKSGVGCKAGKSSILVTATNLCPPNYDLPSDNGGWCNPPREHFDLAKPAYLKIAEYKAGIVPIQYRRVPCKKEGGIRFTITGNPYFNLVSVWNVGGSGEITEVLVKGEEKVKNWTNLKRNWGQKWESDEMLVGETLSFRVKASDGRYTTSLRIAPKDWKFGQTFVGKNFP* 274
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g1881 273 PANTHER EXPANSIN-A32 21 272 - -
Pvu1g1881 273 Pfam Lytic transglycolase 81 168 IPR009009 -
Pvu1g1881 273 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 64 178 IPR007112 -
Pvu1g1881 273 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 188 269 IPR007117 -
Pvu1g1881 273 Gene3D - 36 174 IPR036908 -
Pvu1g1881 273 PRINTS Expansin/Lol pI family signature 47 62 IPR007118 GO:0005576
Pvu1g1881 273 PRINTS Expansin/Lol pI family signature 85 103 IPR007118 GO:0005576
Pvu1g1881 273 PRINTS Expansin/Lol pI family signature 161 177 IPR007118 GO:0005576
Pvu1g1881 273 PRINTS Expansin/Lol pI family signature 217 231 IPR007118 GO:0005576
Pvu1g1881 273 PRINTS Expansin/Lol pI family signature 255 269 IPR007118 GO:0005576
Pvu1g1881 273 SUPERFAMILY PHL pollen allergen 175 268 IPR036749 -
Pvu1g1881 273 Gene3D - 177 272 IPR036749 -
Pvu1g1881 273 PRINTS Expansin signature 76 90 IPR002963 GO:0009664
Pvu1g1881 273 PRINTS Expansin signature 117 127 IPR002963 GO:0009664
Pvu1g1881 273 PRINTS Expansin signature 136 153 IPR002963 GO:0009664
Pvu1g1881 273 PRINTS Expansin signature 153 166 IPR002963 GO:0009664
Pvu1g1881 273 PRINTS Expansin signature 177 189 IPR002963 GO:0009664
Pvu1g1881 273 PRINTS Expansin signature 189 210 IPR002963 GO:0009664
Pvu1g1881 273 PRINTS Expansin signature 226 247 IPR002963 GO:0009664
Pvu1g1881 273 PRINTS Expansin signature 255 271 IPR002963 GO:0009664
Pvu1g1881 273 SUPERFAMILY Barwin-like endoglucanases 42 196 IPR036908 -
Pvu1g1881 273 SMART dpbb_1 81 168 IPR007112 -
Pvu1g1881 273 Pfam Expansin C-terminal domain 179 258 IPR007117 -
Pvu1g1881 273 PANTHER EXPANSIN-A15 21 272 IPR002963 GO:0009664
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu1g1881 Pvu-Chr1 44623426 44625593 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu1g1881 42 272 Expansin Gene Family AT2G39700 59.227 8.19e-104 301
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu1g1881 - - gmx:100800424 432.18
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu1g1881 1 44623426 44625593 Pvu1g1881 1 44623426 44625593 ECH