Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g1877 ATGGGTTTGCTTCAAAGCCAACCGAATCTCACTCGTTTCCTACCCTCTTCATGCTTAACATTGCATCTTTTTTTCTCCCTCTCTCTTCACTTCACATCTACTTCCAAGTTTGGGAACGCAACAACTCTTGCAAACCCAAAACACGTTACTATTACTATTAGAGGTACCTTCTTCCCTCAACCATTCCCACTCTCTTCATTGCTCTTCTTCCATTCATCACTCATTCTCCATAACATTATCTCCCTGATCACCATGCAAATGCAAGAGGAACACATGCAAATCATCAAGGGCAAGCGCACAAAGCGTCAAAGGCTTCCATCGCCACTTAGGTTAACCATGCCAACATGTTCCACCGCAGGACGAAGCAGCACCGACAATTTCGCAGATTTTGATCCTGTAACAACCTCAAACGAATTAAGGAACCAAGAGGATGAAGACTTGGCCAATTGTTTGATTCTCTTGGCTCAAGGCCACAACACTCCAAAACCCTCACACAACAAGGAATCGGGGCTGTATGTTTACGAGTGCAAGACTTGTAACCGATGCTTCCCTTCGTTTCAAGCCCTTGGGGGCCACAGAGCCAGCCACAAGAGATTTTCCAAGGCTAGTGCAGAAGAAAAGCAAGGACCACTTACTACTTTTGGGGATAATAATAATCATGATGATTATTGTGTCCCCACAAGCACCACCCTCACCTTACAATTATCAACGTTTTTGTATAATAGCAGCAACAGCACTAGGAGTAGTACTATTAATGCTAAACCTAAGGTTCATGAGTGTTCCATATGCGGGTCAGAGTTCTCATCTGGGCAAGCCTTGGGGGGACACATGAGAAGGCACAGAAATTTTGTGAGTGCACCTACAAGTGGGACAATTGCTTATGGTGGTGATGGAAGCCCTGAAATTCCAGAAACCAAGAAACACAAAGATGTTTTGAACTTGGACTTGAATCTTCCGGCCCCTGAGGATGATCATCACAGAGAATCCAACTTGTTTCCTTTTCAGTCCAAAGAAAAAGTCATTGTCTTCTCTGCAACTTCTTTGGTGGATTGCCATTACTGA 1062 0.4416 MGLLQSQPNLTRFLPSSCLTLHLFFSLSLHFTSTSKFGNATTLANPKHVTITIRGTFFPQPFPLSSLLFFHSSLILHNIISLITMQMQEEHMQIIKGKRTKRQRLPSPLRLTMPTCSTAGRSSTDNFADFDPVTTSNELRNQEDEDLANCLILLAQGHNTPKPSHNKESGLYVYECKTCNRCFPSFQALGGHRASHKRFSKASAEEKQGPLTTFGDNNNHDDYCVPTSTTLTLQLSTFLYNSSNSTRSSTINAKPKVHECSICGSEFSSGQALGGHMRRHRNFVSAPTSGTIAYGGDGSPEIPETKKHKDVLNLDLNLPAPEDDHHRESNLFPFQSKEKVIVFSATSLVDCHY* 354
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g1877 353 ProSitePatterns Zinc finger C2H2 type domain signature. 260 280 IPR013087 -
Pvu1g1877 353 ProSiteProfiles Zinc finger C2H2 type domain profile. 174 196 IPR013087 -
Pvu1g1877 353 ProSitePatterns Zinc finger C2H2 type domain signature. 176 196 IPR013087 -
Pvu1g1877 353 SMART c2h2final6 174 196 IPR013087 -
Pvu1g1877 353 SMART c2h2final6 258 280 IPR013087 -
Pvu1g1877 353 SUPERFAMILY beta-beta-alpha zinc fingers 173 280 IPR036236 -
Pvu1g1877 353 PANTHER ZINC FINGER, C2H2-LIKE PROTEIN-RELATED 85 352 - -
Pvu1g1877 353 ProSiteProfiles Zinc finger C2H2 type domain profile. 258 280 IPR013087 -
Pvu1g1877 353 PANTHER ZINC FINGER PROTEIN ZAT5 85 352 - -
Pvu1g1877 353 Pfam C2H2-type zinc finger 257 281 - -
Pvu1g1877 353 Pfam C2H2-type zinc finger 173 197 - -
Pvu1g1877 353 Gene3D Classic Zinc Finger 171 280 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu1g1877 Pvu-Chr1 44582723 44583794 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu1g1877 90 353 C2H2 Transcription Factor Family AT2G28200 44.966 2.84e-55 181
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Pvu1g1877 zf-C2H2_6 1.6e-10 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu1g1877 - - gsj:114399832 438.343
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu1g1877 1 44582723 44583794 Pvu11g0887 11 8345523 8347015 ECH
Pvu1g1877 1 44582723 44583794 Pvu1g1877 1 44582723 44583794 ECH
Pvu7g1560 7 37352490 37353705 Pvu1g1877 1 44582723 44583794 ECH
Pvu5g1346 5 35542895 35543785 Pvu1g1877 1 44582723 44583794 ECH
Pvu1g1877 1 44582723 44583794 Pvu5g1346 5 35542895 35543785 ECH
Pvu1g1877 1 44582723 44583794 Pvu7g1560 7 37352490 37353705 PCT