Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g1876 ATGCCGATCAGAAACATCGCCATCGGAAGGCCCGAGGAGGCCACTAACCCCGACACATTGAAGGCGGGTCTGGCTGAGTTCATCTCCACCCTCATCTTCGTGTTCGCCGGCTCGGGTTCCGGCATCGCCTTCAACAAGCTTACCGACAACGGCGCCGCCACACCTGCCGGTCTCATCTCCGCCTCCATCGCCCACGCATTCGGCCTTTTTGTCGCCGTCTCCGTCGGCGCCAACATCTCCGGAGGTCACGTGAACCCCGCCGTCACCTTCGGCGCCTTCATCGGAGGCAACATCACCTTTCTCCGCGGTGTCGTCTACATCATCGCCCAGCTCCTTGGCTCCGTGGTGGCCTCCCTCCTCCTGGCCTTCGTGACCTCCTCCACTGTTCCCGCATTTGGACTCTCAGCTGGAGTTGGAGTGGGTAACGCTTTGGTGTTGGAGATCGTGATGACCTTCGGTTTGGTTTACACTGTCTACGCTACCGCCATTGACCCCAAGAGAGGTAGTTTGGGAACCATCGCACCCATCGCCATTGGTTTCATCGTTGGCGCTAACATTTTGTTGGGTGGGGCCTTCTCCGGAGCAGCCATGAACCCTGCAGTCACATTCGGGCCCGCCGTTGTTAGCTGGACCTGGACCAACAACTGGATCTACTGGGTTGGCCCTCTCATCGGTGGTGGTCTTGCTGGGCTTATCTACGAGGTCGTCTTCATCAGCCACACCCACGAGCAGCTCCCAACCACTGACTACTAG 753 0.591 MPIRNIAIGRPEEATNPDTLKAGLAEFISTLIFVFAGSGSGIAFNKLTDNGAATPAGLISASIAHAFGLFVAVSVGANISGGHVNPAVTFGAFIGGNITFLRGVVYIIAQLLGSVVASLLLAFVTSSTVPAFGLSAGVGVGNALVLEIVMTFGLVYTVYATAIDPKRGSLGTIAPIAIGFIVGANILLGGAFSGAAMNPAVTFGPAVVSWTWTNNWIYWVGPLIGGGLAGLIYEVVFISHTHEQLPTTDY* 251
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g1876 250 PANTHER AQUAPORIN TIP1-1 1 250 - -
Pvu1g1876 250 ProSitePatterns MIP family signature. 196 204 IPR022357 -
Pvu1g1876 250 CDD MIP 21 236 IPR000425 GO:0015267|GO:0016020|GO:0055085
Pvu1g1876 250 SUPERFAMILY Aquaporin-like 13 246 IPR023271 -
Pvu1g1876 250 PANTHER AQUAPORIN-8 1 250 IPR034294 -
Pvu1g1876 250 Pfam Major intrinsic protein 15 233 IPR000425 GO:0015267|GO:0016020|GO:0055085
Pvu1g1876 250 ProSitePatterns MIP family signature. 83 91 IPR022357 -
Pvu1g1876 250 Gene3D Glycerol uptake facilitator protein. 4 250 IPR023271 -
Pvu1g1876 250 PRINTS Major intrinsic protein family signature 21 40 IPR000425 GO:0015267|GO:0016020|GO:0055085
Pvu1g1876 250 PRINTS Major intrinsic protein family signature 65 89 IPR000425 GO:0015267|GO:0016020|GO:0055085
Pvu1g1876 250 PRINTS Major intrinsic protein family signature 102 121 IPR000425 GO:0015267|GO:0016020|GO:0055085
Pvu1g1876 250 PRINTS Major intrinsic protein family signature 146 164 IPR000425 GO:0015267|GO:0016020|GO:0055085
Pvu1g1876 250 PRINTS Major intrinsic protein family signature 179 201 IPR000425 GO:0015267|GO:0016020|GO:0055085
Pvu1g1876 250 PRINTS Major intrinsic protein family signature 216 236 IPR000425 GO:0015267|GO:0016020|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu1g1876 Pvu-Chr1 44550201 44551499 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu1g1876 1 250 Major Intrinsic Protein MIP AT2G36830 84.064 5.01e-148 411
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu1g1876 K09873 - gmx:100527509 439.499
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu1g1876 1 44550201 44551499 Pvu1g1876 1 44550201 44551499 ECH
Pvu1g1876 1 44550201 44551499 Pvu7g1559 7 37339423 37341140 PCT