Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g1859 ATGGGTAGAGCTCCTTGTTGTGACAAGGCAAATGTAAAGAAAGGGCCATGGTCACCAGAAGAAGATGCAAAGCTAAAGGACTACATAGAGCAACATGGCACCGGAGGGAATTGGATTGCCCTCCCACAAAAAGTTGGTTTGAAAAGATGTGGCAAGAGCTGTAGATTAAGGTGGCTTAATTATCTTAGACCCAATATTAAGCATGGTCAATTTTCTGATGCAGAAGATGAAGTAATCTGTAGCCTCTTTGCTAGCATTGGAAGCAGGTGGTCCATAATAGCATCTCAGCTGCCAGGGAGAACTGACAATGACATCAAGAACTATTGGAACACCAGGCTTAAGAAGAAAATGATGGCCATGAATCCTTCTCCCCAGAGTAAACCTCGTCGAATTACCCTTTTATCCATCCTTGAAAGCTCAACACCATCTTCATCACCATTATCATTCAGAGACAACAGCAACTCATACTACCATCCCCACGGTTCTTTCACAGGCGTCGGCTCCTTTTCCTACACTTCAAGTCTTCTGAGTGGAAACAACTCTTCTGCTTCTGCTGATTCCTTCTTTCAAGCACAAGAGAGTTTCATAGACCCCACCCAGAAGTGCCAATTCAAAGATAGCAGCAACAATAGTATGTTTGTGTTCGGTGGTGAAGCCGCAGCCACTAGTTGCAGCTCTTCTGATGCGAGCTGCAACAACCAGATCAGTCAAGTCACGGAGCCAGAATTTGGTGAGGCAAGTTTTGTGGAGCAGATAGGTGTTGCTGATAATCACCTCTACAGTGGGGTGGAAAATACTACTCACAAGTTGATGATGTTCTCCAGTGGCAGTGCTAGTACTGTGAGTGGGTGGACAGACAAACAAAATGGATTGTGGGAACAAAATCCATTGGATTATGGTCTAGAGGAAATTAAACAGCTAATTAGCACTAATAACAATTGCAACAACTTTTTGTTTGATGATAAGAAGACAGAAGAAAGGGTCACGTATTACTGA 996 0.4347 MGRAPCCDKANVKKGPWSPEEDAKLKDYIEQHGTGGNWIALPQKVGLKRCGKSCRLRWLNYLRPNIKHGQFSDAEDEVICSLFASIGSRWSIIASQLPGRTDNDIKNYWNTRLKKKMMAMNPSPQSKPRRITLLSILESSTPSSSPLSFRDNSNSYYHPHGSFTGVGSFSYTSSLLSGNNSSASADSFFQAQESFIDPTQKCQFKDSSNNSMFVFGGEAAATSCSSSDASCNNQISQVTEPEFGEASFVEQIGVADNHLYSGVENTTHKLMMFSSGSASTVSGWTDKQNGLWEQNPLDYGLEEIKQLISTNNNCNNFLFDDKKTEERVTYY* 332
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g1859 331 Gene3D - 7 68 - -
Pvu1g1859 331 SUPERFAMILY Homeodomain-like 11 109 IPR009057 -
Pvu1g1859 331 PANTHER OS09G0431300 PROTEIN 1 315 - -
Pvu1g1859 331 ProSiteProfiles Myb-like domain profile. 9 62 IPR001005 -
Pvu1g1859 331 Pfam Myb-like DNA-binding domain 69 111 IPR001005 -
Pvu1g1859 331 Pfam Myb-like DNA-binding domain 14 62 IPR001005 -
Pvu1g1859 331 SMART sant 13 64 IPR001005 -
Pvu1g1859 331 SMART sant 67 115 IPR001005 -
Pvu1g1859 331 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 117 IPR017930 -
Pvu1g1859 331 PANTHER TRANSCRIPTION FACTOR RAX3 1 315 - -
Pvu1g1859 331 Gene3D - 69 132 - -
Pvu1g1859 331 CDD SANT 16 62 IPR001005 -
Pvu1g1859 331 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 62 IPR017930 -
Pvu1g1859 331 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu1g1859 Pvu-Chr1 44403710 44405788 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu1g1859 1 118 MYB Transcription Factor Family AT5G65790 86.441 1.44e-76 238
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Pvu1g1859 Myb_DNA-binding 5.7e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu1g1859 K09422 - gmx:778084 512.686
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu1g1859 1 44403710 44405788 Pvu7g1519 7 36515958 36518034 PCT