Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g1858 ATGTCAAAAGATTCTGAGGAGATAAAAACCATTGAGCAGTGGAAATGGTCCGAAATGCAAGGCCTTGAGCTTGTTCCTGATGCTGCAACTTCACAACAACAACAACAAGATCAAGTTCCAAGGGAAATGGACAGTTCTGAACAACCCAACAAAGAGGCTGCTGCTGCTGCAGTTACTATGAACGGTGGTTCCATTAGTGGGGAGAAGGCAGAGAGTGTTCCCTCTGTTGGGTTTGGAGAGCTTTTCAGATTCGCTGATGGGTTGGATTATGTTCTCATGGGAATTGGAACGGTTGGAGCAGTTGTGCACGGTTGTTCACTGCCTCTCTTTCTTCGCTTCTTTGCGGATCTTGTCAATTCCTTTGGCTCCAATGCTAATGATGTGGACAAGATGACACAGGAAGTGGTTAAGTATGCATTTTACTTCCTGGTGGTGGGGGCTGCTATATGGGCATCTTCCTGGGCAGAGATTTCGTGTTGGATGTGGAGTGGGGAACGTCAATCCACCAGGATGAGAATAAAGTACCTGGAGGCTGCGTTGAACCAGGACATTCAGTTCTTTGACACTGATGTGCGGACTTCCGATGTTGTTTTCGCCATCAACACCGATGCTGTCATGGTCCAGGATGCCATTAGTGAGAAGTTGGGGAATTTCATTCACTACATGGCCACGTTTGTTTCTGGCTTTGTTGTGGGTTTCACTGCTGTGTGGCAATTGGCTTTGGTCACTCTTGCTGTTGTCCCTATGATAGCTGTGATTGGAGGCATTCACACCACCACCTTGGCCAAGCTCTCTGGCAAGAGCCAGGAAGCTCTTTCTCAAGCTGGCAACATTGTGGAACAGACGGTTGCACAAATCCGAGTGGTGCTGGCCTTCGTTGGGGAGTCCAGAGCATTACAGGCCTATTCATCAGCCTTGAGGGTTTCACAGAAGCTTGGTTACAAAACTGGGTTTGCAAAGGGAATGGGATTGGGGGCCACCTACTTTGTTGTTTTCTGCTGTTATGCGCTTCTGCTGTGGTATGGAGGCTATCTTGTTAGGCACCATGCCACCAATGGAGGACTTGCCATTGCAACCATGTTTGCTGTTATGATTGGTGGATTGGGTTTGGGGCAATCTGCACCAAGCATGGCTGCATTTACAAAAGCCAGAGTTGCTGCTGCAAAGATTTTCCGTATAATTGATCACAAGCCGAGCATTGATCGAAATAGCGAATCTGGCATTGAACTAGAGACTGTTACTGGACTTGTGGAACTGAAAAATGTAGACTTTTCTTACCCATCTAGGCCAGAAGTTCGGATCCTCAATGATTTCTCCTTGAATGTGCCTGCTGGCAAGACCATAGCTCTGGTGGGTAGCAGCGGCTCTGGTAAGAGCACTGTTGTCTCCCTCATTGAGAGATTCTATGACCCATCTTCAGGACAAGTTCTATTAGATGGGCATGACATTAAAACTTTGAAGCTTAGATGGTTGAGGCAGCAGATAGGATTAGTGAGCCAAGAGCCTGCTCTGTTTGCTACCACAATACGAGAAAATATACTGTTGGGTAGGCCTGATGCAAACCAGGTTGAGATTGAAGAAGCTGCCAGGGTTGCTAATGCACATTCCTTCATCATTAAACTTCCTGAAGGCTATGAAACCCAGGTGGGAGAAAGAGGGCTGCAACTTTCTGGAGGGCAAAAACAGAGAATAGCAATAGCAAGGGCAATGTTGAAAAACCCTGCAATTCTTCTCCTAGATGAGGCAACAAGTGCATTGGACTCAGAGTCAGAAAAACTGGTGCAAGAAGCCCTTGACCGGTTCATGATTGGCAGAACAACTCTTGTCATTGCCCATCGCCTCTCCACAATTCGCAAAGCTGATCTTGTAGCTGTACTTCAGCAAGGAAGTGTTTCTGAAATTGGAACTCATGATGAGTTGTTCTCAAAAGGTGATAATGGAGTCTATGCCAAGCTTATAAAGATGCAGGAGATGGCTCATGAAACTGCTATGAGTAATGCCAGAAAGAGCAGTGCAAGGCCTTCAAGTGCCAGAAACTCTGTCAGCTCACCAATAATTGCTAGGAATTCTTCTTATGGACGGTCACCATACTCGCGTAGGCTGTCTGATTTCTCTACATCTGATTTTAGTCTGTCCCTAGATGCATCACATTCAAATTACAGGCTTGAAAAGCTTGCTTTCAAGGAGCAAGCTAGTTCCTTCTGGAGACTTGCAAAAATGAACTCTCCTGAATGGCTTTATGCTTTAATTGGCTCTATAGGATCCGTTATTTGTGGATCTCTCAGTGCCTTCTTTGCTTATGTTCTTAGTGCTGTCCTCAGTGTGTACTACAATCCAGACCACAGATACATGATCCGTGAAATAGAAAAGTACTGTTACTTGTTGATTGGTCTTTCATCAACCGCACTTCTCTTCAACACACTGCAACACTTCTTCTGGGACATTGTTGGGGAAAATCTTACTAAACGTGTGAGGGAGAAAATGCTTACAGCGGTGCTAAAAAATGAAATGGCGTGGTTTGATCAGGAGGAAAATGAGAGTGCCAGGATTGCCGCAAGGCTGGCTCTTGATGCCAACAATGTCAGATCAGCCATTGGAGATCGAATTTCAGTAATTGTGCAGAACACTGCACTTATGCTAGTTGCCTGTACTGCAGGTTTTGTGTTGCAGTGGCGCCTTGCCCTTGTCCTTGTAGCTGTCTTCCCTATTGTTGTTGCAGCCACTGTTTTGCAGAAAATGTTCATGACTGGTTTCTCTGGTGACCTGGAAGCTGCTCATGCCAAGGCTACACAACTTGCAGGAGAAGCTATAGCCAATGTGAGGACTGTTGCAGCCTTCAATTCAGAAACAAAAATTGTTGGTCTTTTCACCTCCAATCTCCAAGCTCCGCTAAAGCGTTGCTTTTGGAAGGGACAAATTTCTGGAAGTGGATATGGTGTAGCTCAGTTTGCACTTTATGCTTCCTATGCACTTGGTCTTTGGTATGCTTCTTGGCTAGTGAAGCATGGCATCTCTGACTTCTCTAAAACAATCCGAGTTTTTATGGTCCTAATGGTTTCTGCAAATGGTGCTGCTGAAACTTTAACACTTGCTCCTGACTTTATCAAAGGAGGCCGAGCCATGAGGTCAGTCTTTGAACTCCTTGACCGTAGAACTGAAATTGAACCTGATGATCAAGATGCCACTCCTTTTCCTGATCGTCTTCGTGGTGAAGTTGAACTTAAGCATGTAGATTTCGTTTATCCAACTCGCCCTGATATGCCAGTTTTTCGTGACCTCAGTCTTCGTGCAAGGGCTGGTAAAACTCTTGCCCTTGTAGGACCTAGTGGTTGTGGTAAGAGCTCAGTTATTGCACTTATACAGAGATTCTATGATCCAACATCTGGTCGGGTCATGATTGATGGCAAGGACATAAGGAAATACAATCTCAAGTCCTTAAGAAGGCACATTTCAGTGGTACCTCAGGAACCATGCTTGTTTGCTACTACTATTTATGAAAACATTGCTTATGGGCATGAGTCAGCCACTGAAGCTGAGATAATTGAAGCTGCAACTCTTGCCAATGCACACAAGTTCATATCTGCTTTGCCAGATGGATACAAAACATTTGTTGGGGAGAGAGGTGTTCAGCTATCCGGGGGACAAAAGCAAAGAATAGCAGTTGCTCGGGCTTTTGTGAGAAAGGCTGAGCTTATGCTTCTTGATGAGGCCACAAGTGCACTTGATGCTGAATCTGAGAGGTCGGTTCAGGAGGCTCTAGACCGTGCCTCCTCAGGAAAAACAACTATCATTGTTGCACACAGGCTATCAACTATAAGGAATGCCCATCTGATTGCTGTGATTGATGATGGCAAAGTAGCTGAGCAAGGCTCTCATTCACAGTTGTTGAAAAATCACCCGGATGGGATTTATTCACGCATGATTCAGTTGCAAAGGTTCACACACAGCCAAGTCATTGGAATGGCCTCAGGCTCAAGCTCTTCTACAAGACCAAAAGATGATGAAAGAGAAGGCTAG 4017 0.4546 MSKDSEEIKTIEQWKWSEMQGLELVPDAATSQQQQQDQVPREMDSSEQPNKEAAAAAVTMNGGSISGEKAESVPSVGFGELFRFADGLDYVLMGIGTVGAVVHGCSLPLFLRFFADLVNSFGSNANDVDKMTQEVVKYAFYFLVVGAAIWASSWAEISCWMWSGERQSTRMRIKYLEAALNQDIQFFDTDVRTSDVVFAINTDAVMVQDAISEKLGNFIHYMATFVSGFVVGFTAVWQLALVTLAVVPMIAVIGGIHTTTLAKLSGKSQEALSQAGNIVEQTVAQIRVVLAFVGESRALQAYSSALRVSQKLGYKTGFAKGMGLGATYFVVFCCYALLLWYGGYLVRHHATNGGLAIATMFAVMIGGLGLGQSAPSMAAFTKARVAAAKIFRIIDHKPSIDRNSESGIELETVTGLVELKNVDFSYPSRPEVRILNDFSLNVPAGKTIALVGSSGSGKSTVVSLIERFYDPSSGQVLLDGHDIKTLKLRWLRQQIGLVSQEPALFATTIRENILLGRPDANQVEIEEAARVANAHSFIIKLPEGYETQVGERGLQLSGGQKQRIAIARAMLKNPAILLLDEATSALDSESEKLVQEALDRFMIGRTTLVIAHRLSTIRKADLVAVLQQGSVSEIGTHDELFSKGDNGVYAKLIKMQEMAHETAMSNARKSSARPSSARNSVSSPIIARNSSYGRSPYSRRLSDFSTSDFSLSLDASHSNYRLEKLAFKEQASSFWRLAKMNSPEWLYALIGSIGSVICGSLSAFFAYVLSAVLSVYYNPDHRYMIREIEKYCYLLIGLSSTALLFNTLQHFFWDIVGENLTKRVREKMLTAVLKNEMAWFDQEENESARIAARLALDANNVRSAIGDRISVIVQNTALMLVACTAGFVLQWRLALVLVAVFPIVVAATVLQKMFMTGFSGDLEAAHAKATQLAGEAIANVRTVAAFNSETKIVGLFTSNLQAPLKRCFWKGQISGSGYGVAQFALYASYALGLWYASWLVKHGISDFSKTIRVFMVLMVSANGAAETLTLAPDFIKGGRAMRSVFELLDRRTEIEPDDQDATPFPDRLRGEVELKHVDFVYPTRPDMPVFRDLSLRARAGKTLALVGPSGCGKSSVIALIQRFYDPTSGRVMIDGKDIRKYNLKSLRRHISVVPQEPCLFATTIYENIAYGHESATEAEIIEAATLANAHKFISALPDGYKTFVGERGVQLSGGQKQRIAVARAFVRKAELMLLDEATSALDAESERSVQEALDRASSGKTTIIVAHRLSTIRNAHLIAVIDDGKVAEQGSHSQLLKNHPDGIYSRMIQLQRFTHSQVIGMASGSSSSTRPKDDEREG* 1339
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g1858 1338 Gene3D - 1061 1312 IPR027417 -
Pvu1g1858 1338 Gene3D - 407 657 IPR027417 -
Pvu1g1858 1338 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 749 1036 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Pvu1g1858 1338 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 95 382 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Pvu1g1858 1338 Pfam ABC transporter transmembrane region 94 367 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Pvu1g1858 1338 Pfam ABC transporter transmembrane region 750 1019 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Pvu1g1858 1338 MobiDBLite consensus disorder prediction 26 43 - -
Pvu1g1858 1338 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 408 656 IPR027417 -
Pvu1g1858 1338 ProSitePatterns ABC transporters family signature. 1211 1225 IPR017871 GO:0005524
Pvu1g1858 1338 PANTHER ATP-BINDING CASSETTE SUB-FAMILY B 93 1315 IPR039421 -
Pvu1g1858 1338 MobiDBLite consensus disorder prediction 25 57 - -
Pvu1g1858 1338 PANTHER ABC TRANSPORTER B FAMILY MEMBER 1 93 1315 - -
Pvu1g1858 1338 CDD ABC_MTABC3_MDL1_MDL2 1072 1311 - -
Pvu1g1858 1338 CDD ABC_6TM_Pgp_ABCB1_D2_like 738 1054 - -
Pvu1g1858 1338 Pfam ABC transporter 435 584 IPR003439 GO:0005524
Pvu1g1858 1338 Pfam ABC transporter 1091 1239 IPR003439 GO:0005524
Pvu1g1858 1338 SUPERFAMILY ABC transporter transmembrane region 81 401 IPR036640 GO:0005524|GO:0016021
Pvu1g1858 1338 SUPERFAMILY ABC transporter transmembrane region 736 1056 IPR036640 GO:0005524|GO:0016021
Pvu1g1858 1338 CDD ABC_MTABC3_MDL1_MDL2 417 656 - -
Pvu1g1858 1338 ProSitePatterns ABC transporters family signature. 556 570 IPR017871 GO:0005524
Pvu1g1858 1338 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 417 653 IPR003439 GO:0005524
Pvu1g1858 1338 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1072 1308 IPR003439 GO:0005524
Pvu1g1858 1338 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1063 1311 IPR027417 -
Pvu1g1858 1338 Gene3D ABC transporter type 1, transmembrane domain 728 1037 IPR036640 GO:0005524|GO:0016021
Pvu1g1858 1338 Gene3D ABC transporter type 1, transmembrane domain 1038 1315 IPR036640 GO:0005524|GO:0016021
Pvu1g1858 1338 Gene3D ABC transporter type 1, transmembrane domain 80 670 IPR036640 GO:0005524|GO:0016021
Pvu1g1858 1338 CDD ABC_6TM_Pgp_ABCB1_D1_like 93 390 - -
Pvu1g1858 1338 SMART AAA_5 1099 1291 IPR003593 -
Pvu1g1858 1338 SMART AAA_5 444 630 IPR003593 -
Pvu1g1858 1338 MobiDBLite consensus disorder prediction 1319 1338 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu1g1858 Pvu-Chr1 44372046 44378693 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu1g1858 68 1333 Calmodulin-binding Proteins AT2G36910 89.740 0.0 2328
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu1g1858 1 44372046 44378693 Pvu1g1858 1 44372046 44378693 ECH