Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g1854 ATGGAGCTTGGAAAGAAGAAGATGCTCAAGTCTTTGATCTCTAAGGTGATAAAGAGTCTTCCATTCTTGGCACCCAATGGAGCACGTACGAGAAGGGTTTGTTATGTGAGTGACGTTGATGAGGAAAACGAAAATGCAACAAGGGTGCCAGAAGATGTTAAGGAAGGACATTTTGCGGTTGTTGCAATGCGAGGTGAAGAAACAAAAAGGTTCGTTGTTGGGTTAGATTATTTGACTGATCCTGCTTTCTTGAAGCTGCTGGAGCAAGCTAGTGAAGAGTATGGTTTTGAACAAAAGGGTACACTTGTGGTTCCTTGCAGCCCTCAAGAACTTCAGAAGATTATAGAGAAGAAACGATTCAATGTCACTTCCTGA 375 0.424 MELGKKKMLKSLISKVIKSLPFLAPNGARTRRVCYVSDVDEENENATRVPEDVKEGHFAVVAMRGEETKRFVVGLDYLTDPAFLKLLEQASEEYGFEQKGTLVVPCSPQELQKIIEKKRFNVTS* 125
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g1854 124 Pfam Auxin responsive protein 18 115 IPR003676 GO:0009733
Pvu1g1854 124 PANTHER F8A24.8 PROTEIN 7 119 - -
Pvu1g1854 124 PANTHER AUXIN-INDUCED PROTEIN-LIKE-RELATED 7 119 IPR003676 GO:0009733
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu1g1854 Pvu-Chr1 44288437 44288811 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu1g1854 37 106 Calmodulin-binding Proteins AT5G20810 42.857 1.36e-13 62.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu1g1854 - K14488 gmx:102661602 193.356
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu1g1854 1 44288437 44288811 Pvu1g1854 1 44288437 44288811 ECH
Pvu1g1854 1 44288437 44288811 Pvu7g2255 7 45886944 45887468 PCT