Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g1844 ATGAAAGATACTACGACCGAGAACCATACTGCTGTCTATGACATGAGCCATCAGACTCTTGTTATGGATGAAGATGGAGGGGATGCCCGTTCTAAGTGCATTGAGGGATTGGCTAAAGAGTATACAAATAATGCACAAGCAAATTCTCATGTGAAAGATAAAAACCGGGGCAAGGACGTTGTATGTTCCAATTGCTTGGGTGGTGGAGTACTTTTATGTTGCTCTGGAAAAGGATGCCAGAAGAGGTACCATCCCTCATGTGTGGATCCTCCTCTCAAATACATTCCTTTGAGGTTTTGGCATTGTATCTGGTGCACTAAGAAAAAAAAAGAGTTTGGCGTGCATTCGGTTTCTGAAGGAGTGAAATCCATCTTGGATTCTAGAGAAGTGGTTTCAAATAATAAAGTGATGCAAAGGGAGTACTTTGTCAAGTATCAAGGTCTCGCTCATGCTCACAACCGCTGGATTACAGAATCAATAATGCTTCTTGAGGCTCCTAAACTCTTGGCCAAGTTTAAGAGTAAACTGCAGGTTACCAGGTGGAAAAGATATTGGAGTATACCTCACCGCTTACTGCTTAAAAGAGAAATTGTGCATTTTGATGGCCATGGTGACAATGATTCAGTTTGCTGTTATGAGTGGCTTGTTAAATGGACTGGTCTTGGTTATGATAATGCTACATGGGAGTTACAAGATGCTTCATTTTTGACATCAGCCAAAGGCAGGAAACTTATACATGATTATGAAAGTCGTCGAAAGAAAGTTGATAAACTGTCAAAAAGTCATTTTGAAGACAATGAGGAGAGAAAAACTTTCGTTGCTGAATTATCAGTGTTGTCATTTGGATATTCACGAGGACTCTATAACCAGTATTTGAGTTATGTGAACAAGCTTCGCATGAGTTGGCACAAAGGCCAAAATGCTCTTATTGTAGATGATCAAATTGACCAGGAGCGCATTATAAAGGTGATTTTGTTTGTATTATCTTTGAATTGTAATAGCAAGAGGCCTTTTCTCATCATCTCAACTTGCACTGCCCTCTCTGTATGGGAAACAGAGTTCTTACATTTGGCACCATCTGCCAATCTCGTAGTTTACAAGGGAAACAGAGATGTACGGAGTGGCATCAGGGCATTAGAGTTTTTTAATGAAGAAAATGGTATATTATTTCAAATACTGTTGTCATCTTCTGATATTGTTGTTAAGGACTTACATGAACTAAGATGCATTCCATGGGAAGCAATAATAATTGATGAATGCCTGCAATCCAGAATTTCAGGACACTTGGACAGTATCAAGATTCTAAAAACTGAAATGAAGCTCCTTCTTGTTAGTGGACAAATAAAGGAAGATCGATCTGATTATATCAAACTGCTTTCATTCCTCGAGTCTGCACATCATGGGTCAAGTATTACTCCAATAGAAACTTCTTTCAATGCTAGCATTTCCAATTTGAAGAGCCAATTGGAAAAATATGTTGTATTCAAATGCAAATCTGGCTCTACTAGGTTTGTAGAGTATTGGGTTCCTGCCTGCCTTTCTCATTTGCAGCTTGAGCAGTATTGTTCAATTCTGCTTTCAAACTTAATGTTGTTATGCTCAGGCCAGAAGACCGACTCAGTTGATGCCCTCCATGAGCTTATTATCTCAACAAGGAAGTGCTGTGATCACCCTTATCTCCTGGAGCCGGCACTGCATAATTCTGTTGTTCAGGGTCTACCTGTTGAAGAACATTTAGATATTGGCATTAAAGCAAGTGGAAAACTGCTACTTCTTGAAAAAATCCTTTTGGAAGCAAAAAGACTTGGGTTAAGGGTGTTAATATTATTTCAGTCAACTAGTGGTTCTGGATCGATTGGAGATATTTTGGATGATGTTCTCTGTCAGAGATTTGGTAAAGATTGCTATGTGCGATATGGTAGAGCTTATACCCCTAAAACAAAGGAAGCCGCTTTAGACACATTTAATGATAGAGATAGTGGAAAATTTGTCTTCTTGATGGAAAACCGTGCTTGTCTCTCTAGTGTTAAGCTTTCTTCAGTGGACACTGTTATATTGTTTGACAGTGATTTTGACCCACAGAATGACCTAAGAGGCTTACAAAGAATGTCTATCAGCTCGAAGTTGAAACAGTTAACCGTTTTCAGGTTGTACTCATATTACACGGTTGAAGAAAAATTTTTAATGCTTGCGAAGGAGGGTATATCTCTTGACAGTAATGTGCGGTTGATTAGCCAGAGTATTTCTCACACACTTCTAAAATGGGGCACCTCCCATTTGTTCAATAAGCTGGATGATTTGCATGCCAGTGTAACTTCTGTTTCTACTCCAGACATTGCAGATCAATCACTTCTACATGATGTACTCTGTGAATTATCATCCCAATTGGTTTGTGGTGCTGATGATATTGATTGTCATGAATGGTCATTCATATCAACAATACAGCAGAATGGAGGGGATTATGCGAGGAACATTCTATTGCTAGGAGAAAGAATAATGAAGGGATTGGGCAGTGAGCCACGTGCTTTTTCCTGGAGTGATCTCCAAGGAAGGTATCCTCAATGGAAATTTTTGTCTGTTTCATCTCAGAGGATGAGGAGTAGGGCCAAACATTTTGATTACATACTAAACGAATCTGACTGTGAAGATCATACAATTATAGGAAAGAGGACATCATCAAATGCTTCCAAGAAGAGAAAAGTGTCCCGGGATGATGTTGATCATAATTTGAAGAAACTGACCAAGGATAAAGTTGACCCCAATTGGAGGAAAGCGTCCAAGGACGTTGTTGAAACAGAGGGGAGGGAACTGTCAAATCATGCCATTGATCCTAAGACTAGGAAGGTGTTCAATGATATTGTTGATTCTTGGGGCAGGAAAATGTCCAAGAATATTCAACCAAGGTCGAGGAGCAAGAAGAATTCAAGTGTTGCCAATAGAGCAAGTAAATCAAATGGGCATCCTTTGGCCAATGCAACTACAGGAGGAACTGCAGCAAACATGCAACTTTCAGAGAAAAGGAAACTACATGACGGACCAAATAGCATCAAATTCTTGCCAAAGTCGAATGTATCAGGTCTTTGTGACATTCTACATTTTCCGAAAAATGTCAAGGTTGTTGCCCTGAGGATTCTTGAGGACATATTCAAACATTACAATGTTAATTGCCAAGAAGTTTCTACTGTACAGGCTTTTGAAATATCTGTGTGTTGGCTGGCAGCTTCTTTGTTGAAACATGAGATTGATAGGAAGGATTCACTCACTCTAGCAAAACTGTGCTTGAATTTCAATTGCAATGAAGAGGAAGCCACAGATGTCTACTCAGAACTGTGGAAACATGTGAAGAAATTTTCTAATTATATACCGAATGGACCGTGTGTTGAGAAATATAATACAAATGGTGCTTCAGAAACTACCATGCCTGAGCTGAATAATTTGACGGAGGAGAGGCAGAATGATTTTCTGGATACTTGTGTTACAAAACTTGTGAAATCTGTCAATAATGAACATGATCTTACAATGAAATCTCCCACAACAGGGGTTTCATGTGACCAGACTTTTACTCTTGGAATTTGTTCATTTCCAAATACACCCACTAGTTTTCCTGTGGAAGCAATTTCTCTCTCCTTGGAGTTTGGCTCTGAAGATGACATCATGGAATCTACGCCCTTAATAGCTGCAGAAGATTCAGCTCTTGAGCATGGGGGTAATGATGTCAACCCTCTTACTGATTATTTGGAAAAACAGAGTCCTATTAGAAGTACAGATATTACACAATCTGATGGCAAAGTTTGTGAAGATCCTCAAGTTTTAATGAATGAATTGGTTGCTATTGAGAATGCTATGAATATGTCTACTCATTCTTTGCAGCTTGACAGTGTTGAGGCAAATGCTGTAACTTCCATTGGTTCTGCTGTTCCTGAGGCCAGACTGTGGGGCAGTGTAATGAGTCCTGTATGTAATGAGTCAATTGGTCTGAAGTTTGCTGAGACAACCTTATATACACAACCATCGGATGCTAATTTGTGGCCGTTGCCTCAGATAGCAACGTCTGATATTCCATCTATTCCGGAGCACAATTCAGCTAGTACTGTCACGCCTCTAGATGATATTTTTTATCATAATCGTGAGGATCATTGTTACATTCATGAGGCTGAAGTAATATTGGAAGCACCAAACGACCTTGTGGAACCAGTTAACTCTTCCTTTGGTTCACCTGTGATACTGCAACCATTCACAAGTGTGGCCATGAATGAAAATATGACACATGTACCTGACAGCTTTACTATTCCTGGATATATGAACAGTGGTTATTTTCAACATCACCATGTGGCATCTGAAATATCCCACCTTGCCTACCTAGACTCACTACTGGATGAAATGGAGAGAATAGAAAACACGAATGAAGAAGCCTTCATAGATCCACTACTAATTGAAATTGAGAGAATAGAAAAGGATAATGAAGAAGCCTTCAAGATACATGAGCAGAAGATATCGCTGCTTCGATCTGAATATGAAAAGGAGGTTGAAAAATTGAGTGAAAAGTACAGGATTTTGCTTCAGAATGTTGATACTGAAGGAGCACTCAAAAAAATGGAACTTGAGACACAATGTAAGTTAGTGTTGAGCAGTGAGGTATTAGCTGAAGTTTGGATCCATATGCTTGATGGTTGTGAAAGGGCTGTGGGACAATGCTCAGAACAAGAGAGGAATGCCTAG 4719 0.3946 MKDTTTENHTAVYDMSHQTLVMDEDGGDARSKCIEGLAKEYTNNAQANSHVKDKNRGKDVVCSNCLGGGVLLCCSGKGCQKRYHPSCVDPPLKYIPLRFWHCIWCTKKKKEFGVHSVSEGVKSILDSREVVSNNKVMQREYFVKYQGLAHAHNRWITESIMLLEAPKLLAKFKSKLQVTRWKRYWSIPHRLLLKREIVHFDGHGDNDSVCCYEWLVKWTGLGYDNATWELQDASFLTSAKGRKLIHDYESRRKKVDKLSKSHFEDNEERKTFVAELSVLSFGYSRGLYNQYLSYVNKLRMSWHKGQNALIVDDQIDQERIIKVILFVLSLNCNSKRPFLIISTCTALSVWETEFLHLAPSANLVVYKGNRDVRSGIRALEFFNEENGILFQILLSSSDIVVKDLHELRCIPWEAIIIDECLQSRISGHLDSIKILKTEMKLLLVSGQIKEDRSDYIKLLSFLESAHHGSSITPIETSFNASISNLKSQLEKYVVFKCKSGSTRFVEYWVPACLSHLQLEQYCSILLSNLMLLCSGQKTDSVDALHELIISTRKCCDHPYLLEPALHNSVVQGLPVEEHLDIGIKASGKLLLLEKILLEAKRLGLRVLILFQSTSGSGSIGDILDDVLCQRFGKDCYVRYGRAYTPKTKEAALDTFNDRDSGKFVFLMENRACLSSVKLSSVDTVILFDSDFDPQNDLRGLQRMSISSKLKQLTVFRLYSYYTVEEKFLMLAKEGISLDSNVRLISQSISHTLLKWGTSHLFNKLDDLHASVTSVSTPDIADQSLLHDVLCELSSQLVCGADDIDCHEWSFISTIQQNGGDYARNILLLGERIMKGLGSEPRAFSWSDLQGRYPQWKFLSVSSQRMRSRAKHFDYILNESDCEDHTIIGKRTSSNASKKRKVSRDDVDHNLKKLTKDKVDPNWRKASKDVVETEGRELSNHAIDPKTRKVFNDIVDSWGRKMSKNIQPRSRSKKNSSVANRASKSNGHPLANATTGGTAANMQLSEKRKLHDGPNSIKFLPKSNVSGLCDILHFPKNVKVVALRILEDIFKHYNVNCQEVSTVQAFEISVCWLAASLLKHEIDRKDSLTLAKLCLNFNCNEEEATDVYSELWKHVKKFSNYIPNGPCVEKYNTNGASETTMPELNNLTEERQNDFLDTCVTKLVKSVNNEHDLTMKSPTTGVSCDQTFTLGICSFPNTPTSFPVEAISLSLEFGSEDDIMESTPLIAAEDSALEHGGNDVNPLTDYLEKQSPIRSTDITQSDGKVCEDPQVLMNELVAIENAMNMSTHSLQLDSVEANAVTSIGSAVPEARLWGSVMSPVCNESIGLKFAETTLYTQPSDANLWPLPQIATSDIPSIPEHNSASTVTPLDDIFYHNREDHCYIHEAEVILEAPNDLVEPVNSSFGSPVILQPFTSVAMNENMTHVPDSFTIPGYMNSGYFQHHHVASEISHLAYLDSLLDEMERIENTNEEAFIDPLLIEIERIEKDNEEAFKIHEQKISLLRSEYEKEVEKLSEKYRILLQNVDTEGALKKMELETQCKLVLSSEVLAEVWIHMLDGCERAVGQCSEQERNA* 1573
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g1844 1572 PANTHER CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 3-RELATED-RELATED 36 1550 - -
Pvu1g1844 1572 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 37 117 IPR013083 -
Pvu1g1844 1572 PANTHER HELICASE PROTEIN MOM1-LIKE ISOFORM X1 36 1550 - -
Pvu1g1844 1572 Gene3D - 287 503 IPR038718 -
Pvu1g1844 1572 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 299 466 IPR014001 -
Pvu1g1844 1572 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 329 464 IPR027417 -
Pvu1g1844 1572 Gene3D - 504 738 IPR027417 -
Pvu1g1844 1572 Coils Coil 1495 1522 - -
Pvu1g1844 1572 MobiDBLite consensus disorder prediction 897 912 - -
Pvu1g1844 1572 ProSiteProfiles Zinc finger PHD-type profile. 59 108 IPR019787 -
Pvu1g1844 1572 Pfam SNF2-related domain 319 560 IPR000330 GO:0005524|GO:0140658
Pvu1g1844 1572 MobiDBLite consensus disorder prediction 962 999 - -
Pvu1g1844 1572 SMART chromo_7 184 253 IPR000953 -
Pvu1g1844 1572 SMART chromo_7 118 177 IPR000953 -
Pvu1g1844 1572 Gene3D - 120 176 - -
Pvu1g1844 1572 Coils Coil 1454 1474 - -
Pvu1g1844 1572 SUPERFAMILY Chromo domain-like 188 251 IPR016197 -
Pvu1g1844 1572 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 505 741 IPR027417 -
Pvu1g1844 1572 MobiDBLite consensus disorder prediction 887 912 - -
Pvu1g1844 1572 ProSiteProfiles Chromo and chromo shadow domain profile. 119 184 IPR000953 -
Pvu1g1844 1572 ProSitePatterns Zinc finger PHD-type signature. 62 105 IPR019786 -
Pvu1g1844 1572 SUPERFAMILY Chromo domain-like 80 175 IPR016197 -
Pvu1g1844 1572 MobiDBLite consensus disorder prediction 960 999 - -
Pvu1g1844 1572 Gene3D - 1472 1553 - -
Pvu1g1844 1572 SMART PHD_3 61 106 IPR001965 -
Pvu1g1844 1572 SUPERFAMILY FYVE/PHD zinc finger 51 111 IPR011011 -
Pvu1g1844 1572 Gene3D - 180 251 - -
Pvu1g1844 1572 Pfam Chromo (CHRromatin Organisation MOdifier) domain 121 175 IPR023780 -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Pvu1g1844 Pvu-Chr1 44157820 44179416 Dispersed/Wgd
       

Transcription factors information


Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Pvu1g1844 SNF2_N 4.5e-07 CL0023
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu1g1844 - K11643 gmx:100813574 2079.68