Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Pvu1g1844 | ATGAAAGATACTACGACCGAGAACCATACTGCTGTCTATGACATGAGCCATCAGACTCTTGTTATGGATGAAGATGGAGGGGATGCCCGTTCTAAGTGCATTGAGGGATTGGCTAAAGAGTATACAAATAATGCACAAGCAAATTCTCATGTGAAAGATAAAAACCGGGGCAAGGACGTTGTATGTTCCAATTGCTTGGGTGGTGGAGTACTTTTATGTTGCTCTGGAAAAGGATGCCAGAAGAGGTACCATCCCTCATGTGTGGATCCTCCTCTCAAATACATTCCTTTGAGGTTTTGGCATTGTATCTGGTGCACTAAGAAAAAAAAAGAGTTTGGCGTGCATTCGGTTTCTGAAGGAGTGAAATCCATCTTGGATTCTAGAGAAGTGGTTTCAAATAATAAAGTGATGCAAAGGGAGTACTTTGTCAAGTATCAAGGTCTCGCTCATGCTCACAACCGCTGGATTACAGAATCAATAATGCTTCTTGAGGCTCCTAAACTCTTGGCCAAGTTTAAGAGTAAACTGCAGGTTACCAGGTGGAAAAGATATTGGAGTATACCTCACCGCTTACTGCTTAAAAGAGAAATTGTGCATTTTGATGGCCATGGTGACAATGATTCAGTTTGCTGTTATGAGTGGCTTGTTAAATGGACTGGTCTTGGTTATGATAATGCTACATGGGAGTTACAAGATGCTTCATTTTTGACATCAGCCAAAGGCAGGAAACTTATACATGATTATGAAAGTCGTCGAAAGAAAGTTGATAAACTGTCAAAAAGTCATTTTGAAGACAATGAGGAGAGAAAAACTTTCGTTGCTGAATTATCAGTGTTGTCATTTGGATATTCACGAGGACTCTATAACCAGTATTTGAGTTATGTGAACAAGCTTCGCATGAGTTGGCACAAAGGCCAAAATGCTCTTATTGTAGATGATCAAATTGACCAGGAGCGCATTATAAAGGTGATTTTGTTTGTATTATCTTTGAATTGTAATAGCAAGAGGCCTTTTCTCATCATCTCAACTTGCACTGCCCTCTCTGTATGGGAAACAGAGTTCTTACATTTGGCACCATCTGCCAATCTCGTAGTTTACAAGGGAAACAGAGATGTACGGAGTGGCATCAGGGCATTAGAGTTTTTTAATGAAGAAAATGGTATATTATTTCAAATACTGTTGTCATCTTCTGATATTGTTGTTAAGGACTTACATGAACTAAGATGCATTCCATGGGAAGCAATAATAATTGATGAATGCCTGCAATCCAGAATTTCAGGACACTTGGACAGTATCAAGATTCTAAAAACTGAAATGAAGCTCCTTCTTGTTAGTGGACAAATAAAGGAAGATCGATCTGATTATATCAAACTGCTTTCATTCCTCGAGTCTGCACATCATGGGTCAAGTATTACTCCAATAGAAACTTCTTTCAATGCTAGCATTTCCAATTTGAAGAGCCAATTGGAAAAATATGTTGTATTCAAATGCAAATCTGGCTCTACTAGGTTTGTAGAGTATTGGGTTCCTGCCTGCCTTTCTCATTTGCAGCTTGAGCAGTATTGTTCAATTCTGCTTTCAAACTTAATGTTGTTATGCTCAGGCCAGAAGACCGACTCAGTTGATGCCCTCCATGAGCTTATTATCTCAACAAGGAAGTGCTGTGATCACCCTTATCTCCTGGAGCCGGCACTGCATAATTCTGTTGTTCAGGGTCTACCTGTTGAAGAACATTTAGATATTGGCATTAAAGCAAGTGGAAAACTGCTACTTCTTGAAAAAATCCTTTTGGAAGCAAAAAGACTTGGGTTAAGGGTGTTAATATTATTTCAGTCAACTAGTGGTTCTGGATCGATTGGAGATATTTTGGATGATGTTCTCTGTCAGAGATTTGGTAAAGATTGCTATGTGCGATATGGTAGAGCTTATACCCCTAAAACAAAGGAAGCCGCTTTAGACACATTTAATGATAGAGATAGTGGAAAATTTGTCTTCTTGATGGAAAACCGTGCTTGTCTCTCTAGTGTTAAGCTTTCTTCAGTGGACACTGTTATATTGTTTGACAGTGATTTTGACCCACAGAATGACCTAAGAGGCTTACAAAGAATGTCTATCAGCTCGAAGTTGAAACAGTTAACCGTTTTCAGGTTGTACTCATATTACACGGTTGAAGAAAAATTTTTAATGCTTGCGAAGGAGGGTATATCTCTTGACAGTAATGTGCGGTTGATTAGCCAGAGTATTTCTCACACACTTCTAAAATGGGGCACCTCCCATTTGTTCAATAAGCTGGATGATTTGCATGCCAGTGTAACTTCTGTTTCTACTCCAGACATTGCAGATCAATCACTTCTACATGATGTACTCTGTGAATTATCATCCCAATTGGTTTGTGGTGCTGATGATATTGATTGTCATGAATGGTCATTCATATCAACAATACAGCAGAATGGAGGGGATTATGCGAGGAACATTCTATTGCTAGGAGAAAGAATAATGAAGGGATTGGGCAGTGAGCCACGTGCTTTTTCCTGGAGTGATCTCCAAGGAAGGTATCCTCAATGGAAATTTTTGTCTGTTTCATCTCAGAGGATGAGGAGTAGGGCCAAACATTTTGATTACATACTAAACGAATCTGACTGTGAAGATCATACAATTATAGGAAAGAGGACATCATCAAATGCTTCCAAGAAGAGAAAAGTGTCCCGGGATGATGTTGATCATAATTTGAAGAAACTGACCAAGGATAAAGTTGACCCCAATTGGAGGAAAGCGTCCAAGGACGTTGTTGAAACAGAGGGGAGGGAACTGTCAAATCATGCCATTGATCCTAAGACTAGGAAGGTGTTCAATGATATTGTTGATTCTTGGGGCAGGAAAATGTCCAAGAATATTCAACCAAGGTCGAGGAGCAAGAAGAATTCAAGTGTTGCCAATAGAGCAAGTAAATCAAATGGGCATCCTTTGGCCAATGCAACTACAGGAGGAACTGCAGCAAACATGCAACTTTCAGAGAAAAGGAAACTACATGACGGACCAAATAGCATCAAATTCTTGCCAAAGTCGAATGTATCAGGTCTTTGTGACATTCTACATTTTCCGAAAAATGTCAAGGTTGTTGCCCTGAGGATTCTTGAGGACATATTCAAACATTACAATGTTAATTGCCAAGAAGTTTCTACTGTACAGGCTTTTGAAATATCTGTGTGTTGGCTGGCAGCTTCTTTGTTGAAACATGAGATTGATAGGAAGGATTCACTCACTCTAGCAAAACTGTGCTTGAATTTCAATTGCAATGAAGAGGAAGCCACAGATGTCTACTCAGAACTGTGGAAACATGTGAAGAAATTTTCTAATTATATACCGAATGGACCGTGTGTTGAGAAATATAATACAAATGGTGCTTCAGAAACTACCATGCCTGAGCTGAATAATTTGACGGAGGAGAGGCAGAATGATTTTCTGGATACTTGTGTTACAAAACTTGTGAAATCTGTCAATAATGAACATGATCTTACAATGAAATCTCCCACAACAGGGGTTTCATGTGACCAGACTTTTACTCTTGGAATTTGTTCATTTCCAAATACACCCACTAGTTTTCCTGTGGAAGCAATTTCTCTCTCCTTGGAGTTTGGCTCTGAAGATGACATCATGGAATCTACGCCCTTAATAGCTGCAGAAGATTCAGCTCTTGAGCATGGGGGTAATGATGTCAACCCTCTTACTGATTATTTGGAAAAACAGAGTCCTATTAGAAGTACAGATATTACACAATCTGATGGCAAAGTTTGTGAAGATCCTCAAGTTTTAATGAATGAATTGGTTGCTATTGAGAATGCTATGAATATGTCTACTCATTCTTTGCAGCTTGACAGTGTTGAGGCAAATGCTGTAACTTCCATTGGTTCTGCTGTTCCTGAGGCCAGACTGTGGGGCAGTGTAATGAGTCCTGTATGTAATGAGTCAATTGGTCTGAAGTTTGCTGAGACAACCTTATATACACAACCATCGGATGCTAATTTGTGGCCGTTGCCTCAGATAGCAACGTCTGATATTCCATCTATTCCGGAGCACAATTCAGCTAGTACTGTCACGCCTCTAGATGATATTTTTTATCATAATCGTGAGGATCATTGTTACATTCATGAGGCTGAAGTAATATTGGAAGCACCAAACGACCTTGTGGAACCAGTTAACTCTTCCTTTGGTTCACCTGTGATACTGCAACCATTCACAAGTGTGGCCATGAATGAAAATATGACACATGTACCTGACAGCTTTACTATTCCTGGATATATGAACAGTGGTTATTTTCAACATCACCATGTGGCATCTGAAATATCCCACCTTGCCTACCTAGACTCACTACTGGATGAAATGGAGAGAATAGAAAACACGAATGAAGAAGCCTTCATAGATCCACTACTAATTGAAATTGAGAGAATAGAAAAGGATAATGAAGAAGCCTTCAAGATACATGAGCAGAAGATATCGCTGCTTCGATCTGAATATGAAAAGGAGGTTGAAAAATTGAGTGAAAAGTACAGGATTTTGCTTCAGAATGTTGATACTGAAGGAGCACTCAAAAAAATGGAACTTGAGACACAATGTAAGTTAGTGTTGAGCAGTGAGGTATTAGCTGAAGTTTGGATCCATATGCTTGATGGTTGTGAAAGGGCTGTGGGACAATGCTCAGAACAAGAGAGGAATGCCTAG | 4719 | 0.3946 | MKDTTTENHTAVYDMSHQTLVMDEDGGDARSKCIEGLAKEYTNNAQANSHVKDKNRGKDVVCSNCLGGGVLLCCSGKGCQKRYHPSCVDPPLKYIPLRFWHCIWCTKKKKEFGVHSVSEGVKSILDSREVVSNNKVMQREYFVKYQGLAHAHNRWITESIMLLEAPKLLAKFKSKLQVTRWKRYWSIPHRLLLKREIVHFDGHGDNDSVCCYEWLVKWTGLGYDNATWELQDASFLTSAKGRKLIHDYESRRKKVDKLSKSHFEDNEERKTFVAELSVLSFGYSRGLYNQYLSYVNKLRMSWHKGQNALIVDDQIDQERIIKVILFVLSLNCNSKRPFLIISTCTALSVWETEFLHLAPSANLVVYKGNRDVRSGIRALEFFNEENGILFQILLSSSDIVVKDLHELRCIPWEAIIIDECLQSRISGHLDSIKILKTEMKLLLVSGQIKEDRSDYIKLLSFLESAHHGSSITPIETSFNASISNLKSQLEKYVVFKCKSGSTRFVEYWVPACLSHLQLEQYCSILLSNLMLLCSGQKTDSVDALHELIISTRKCCDHPYLLEPALHNSVVQGLPVEEHLDIGIKASGKLLLLEKILLEAKRLGLRVLILFQSTSGSGSIGDILDDVLCQRFGKDCYVRYGRAYTPKTKEAALDTFNDRDSGKFVFLMENRACLSSVKLSSVDTVILFDSDFDPQNDLRGLQRMSISSKLKQLTVFRLYSYYTVEEKFLMLAKEGISLDSNVRLISQSISHTLLKWGTSHLFNKLDDLHASVTSVSTPDIADQSLLHDVLCELSSQLVCGADDIDCHEWSFISTIQQNGGDYARNILLLGERIMKGLGSEPRAFSWSDLQGRYPQWKFLSVSSQRMRSRAKHFDYILNESDCEDHTIIGKRTSSNASKKRKVSRDDVDHNLKKLTKDKVDPNWRKASKDVVETEGRELSNHAIDPKTRKVFNDIVDSWGRKMSKNIQPRSRSKKNSSVANRASKSNGHPLANATTGGTAANMQLSEKRKLHDGPNSIKFLPKSNVSGLCDILHFPKNVKVVALRILEDIFKHYNVNCQEVSTVQAFEISVCWLAASLLKHEIDRKDSLTLAKLCLNFNCNEEEATDVYSELWKHVKKFSNYIPNGPCVEKYNTNGASETTMPELNNLTEERQNDFLDTCVTKLVKSVNNEHDLTMKSPTTGVSCDQTFTLGICSFPNTPTSFPVEAISLSLEFGSEDDIMESTPLIAAEDSALEHGGNDVNPLTDYLEKQSPIRSTDITQSDGKVCEDPQVLMNELVAIENAMNMSTHSLQLDSVEANAVTSIGSAVPEARLWGSVMSPVCNESIGLKFAETTLYTQPSDANLWPLPQIATSDIPSIPEHNSASTVTPLDDIFYHNREDHCYIHEAEVILEAPNDLVEPVNSSFGSPVILQPFTSVAMNENMTHVPDSFTIPGYMNSGYFQHHHVASEISHLAYLDSLLDEMERIENTNEEAFIDPLLIEIERIEKDNEEAFKIHEQKISLLRSEYEKEVEKLSEKYRILLQNVDTEGALKKMELETQCKLVLSSEVLAEVWIHMLDGCERAVGQCSEQERNA* | 1573 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Pvu1g1844 | 1572 | PANTHER | CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 3-RELATED-RELATED | 36 | 1550 | - | - | |
Pvu1g1844 | 1572 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 37 | 117 | IPR013083 | - | |
Pvu1g1844 | 1572 | PANTHER | HELICASE PROTEIN MOM1-LIKE ISOFORM X1 | 36 | 1550 | - | - | |
Pvu1g1844 | 1572 | Gene3D | - | 287 | 503 | IPR038718 | - | |
Pvu1g1844 | 1572 | ProSiteProfiles | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 299 | 466 | IPR014001 | - | |
Pvu1g1844 | 1572 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 329 | 464 | IPR027417 | - | |
Pvu1g1844 | 1572 | Gene3D | - | 504 | 738 | IPR027417 | - | |
Pvu1g1844 | 1572 | Coils | Coil | 1495 | 1522 | - | - | |
Pvu1g1844 | 1572 | MobiDBLite | consensus disorder prediction | 897 | 912 | - | - | |
Pvu1g1844 | 1572 | ProSiteProfiles | Zinc finger PHD-type profile. | 59 | 108 | IPR019787 | - | |
Pvu1g1844 | 1572 | Pfam | SNF2-related domain | 319 | 560 | IPR000330 | GO:0005524|GO:0140658 | |
Pvu1g1844 | 1572 | MobiDBLite | consensus disorder prediction | 962 | 999 | - | - | |
Pvu1g1844 | 1572 | SMART | chromo_7 | 184 | 253 | IPR000953 | - | |
Pvu1g1844 | 1572 | SMART | chromo_7 | 118 | 177 | IPR000953 | - | |
Pvu1g1844 | 1572 | Gene3D | - | 120 | 176 | - | - | |
Pvu1g1844 | 1572 | Coils | Coil | 1454 | 1474 | - | - | |
Pvu1g1844 | 1572 | SUPERFAMILY | Chromo domain-like | 188 | 251 | IPR016197 | - | |
Pvu1g1844 | 1572 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 505 | 741 | IPR027417 | - | |
Pvu1g1844 | 1572 | MobiDBLite | consensus disorder prediction | 887 | 912 | - | - | |
Pvu1g1844 | 1572 | ProSiteProfiles | Chromo and chromo shadow domain profile. | 119 | 184 | IPR000953 | - | |
Pvu1g1844 | 1572 | ProSitePatterns | Zinc finger PHD-type signature. | 62 | 105 | IPR019786 | - | |
Pvu1g1844 | 1572 | SUPERFAMILY | Chromo domain-like | 80 | 175 | IPR016197 | - | |
Pvu1g1844 | 1572 | MobiDBLite | consensus disorder prediction | 960 | 999 | - | - | |
Pvu1g1844 | 1572 | Gene3D | - | 1472 | 1553 | - | - | |
Pvu1g1844 | 1572 | SMART | PHD_3 | 61 | 106 | IPR001965 | - | |
Pvu1g1844 | 1572 | SUPERFAMILY | FYVE/PHD zinc finger | 51 | 111 | IPR011011 | - | |
Pvu1g1844 | 1572 | Gene3D | - | 180 | 251 | - | - | |
Pvu1g1844 | 1572 | Pfam | Chromo (CHRromatin Organisation MOdifier) domain | 121 | 175 | IPR023780 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Pvu1g1844 | Pvu-Chr1 | 44157820 | 44179416 | Dispersed/Wgd |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TR | SNF2 | Pvu1g1844 | SNF2_N | 4.5e-07 | CL0023 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Pvu1g1844 | - | K11643 | gmx:100813574 | 2079.68 |