Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g1843 ATGGAAGCAACTACCCTTACCAACGCCCAAAACGGTTCCTTCTGCCTCCCATCCGCCAAGACCACTGATCCGCTCAATTGGGGAACGGCCGCGGAGGCGCTCAAGGGGAGCCACCTCGACGAGGTCAAGCGCATGGTGGCCGAATACCGCCAGCCGCTGGTCCGCCTCGGCGGCGAGACGCTCACCATCGCTCAGGTGGCGGCGGTGTCTGGCCACGACCAAGGCGTGAGGGTTGAGCTGTCGGAGTCCGCTCGGGAAGGTGTTAAGGCGAGCAGTGAGTGGGTGATGAACAGCATGAACAATGGTACTGACAGTTACGGCGTCACCACCGGCTTCGGTGCCACCTCCCACCGCCGAACCAAACAAGGTGGTGCTCTGCAGAAAGAACTCATCAGGTTTTTAAACGCTGGAATATTTGGAAATGGGACTGAATCATCCCACACACTGCCACACACTGCAACCAGAGCAGCCATGTTAGTGAGGATCAACACTCTTCTTCAAGGCTACTCAGGCATCAGATTTGAAATCTTAGAATCCATCACCAAGCTCCTTAACAACAACGTTACCCCATGTTTGCCACTTCGTGGTACAATCACAGCTTCTGGAGATCTTGTTCCACTTTCCTATATTGCTGGTTTGCTCACTGGCAGACCTAACTCCAAAGCTGTTGGACCTTCTGGAGAAGTACTTACTGCTAAGCAAGCTTTTGAATTGGCTAACATCAATTCTGAGTTCTATGAATTGCAACCCAAGGAAGGCCTTGCCCTTGTTAATGGCACGGCTGTCGGTTCTGGCATGGCTTCTATAGTTCTCTTTGATGCAAATATACTAGCTGTGTTGTCTGAAGTTCTATCAGCTATTTTTGCCGAAGTGATGCAAGGGAAACCTGAGTTTACTGATCATTTGACACACAAGTTGAAGCACCACCCTGGTCAAATTGAGGCTGCTGCCATTATGGAGCACATTTTGGATGGAAGTTCCTACATGAAGGATGCTAAGAAGCTGCATGAAATAGATCCGTTGCAAAAGCCAAAACAAGATAGATATGCCCTCAGAACTTCACCACAGTGGCTTGGTCCTCTCATTGAAGTCATTCGTTTCTCCACCAAGTCAATTGAGAGAGAGATTAACTCCGTGAATGACAACCCTCTTATTGATGTTTCAAGGAACAAGGCATTGCATGGTGGTAATTTCCAAGGAACCCCAATTGGAGTCTCCATGGACAACACTCGTTTGGCTCTTGCATCTATCGGCAAACTCATGTTTGCTCAATTCTCCGAGCTTGTCAATGATTTCTACAACAACGGTCTGCCTTCAAATCTCACTGCTAGCAGAAATCCTAGCTTGGATTATGGTTTCAAGGGAGCTGAAATTGCCATGGCTTCCTATTGCTCTGAACTCCAGTATCTGGCAAATCCAGTAACAAGCCATGTCCAAAGTGCTGAGCAACACAACCAAGATGTGAACTCTTTGGGTTTGATTTCAGCTAGGAAGACAAATGAATCTATTGAGATCCTTAAGCTCATGTCTTCCACGTTCTTGATGGGACTTTGCCAAGCAATTGACTTGAGGCATTTGGAGGAGAATTTGAAAAGCTCGGTCAAGAACACTGTGAGTCAAGTTTCCAAGAGGACTCTTACCACAGGTGGCAACGGAGAACTCCATCCTTCAAGATTTTGCGAAAAGGATCTGCTGAAAGTGGTTGACAGGGAGTATGTATTTTCCTACATAGATGACCCATGCAGTGGTACATACCCACTGATGCAAAAACTTAGGCAAGTGCTTGTAGACCATGCCTTGATAAATGCAGAGAATGAGAAGGATGTCAACACATCAATCTTTCAAAAGATTGCAACCTTTGAGGAGGAGTTGAAGACCATCTTGCCAAAGGAGGTTGAAAGTACAAGGGCTGCTTATGAGAGTGGGAAAGCTGCAATTCCAAACAAGATAAAAGAATGCAGATCTTACCCACTCTACAAGTTTGTGAGAGAGGAGTTGGGCACTGGGTTGCTAACTGGAGAAAAGGTGAAGTCACCAGGTGAAGAGTTTGACAAGTTATTCACAGCAATATGCCAGGGCAAAATTATTGATCCTCTTCTCGAATGCCTTGGAGAGTGGAATGGAGCTCCTCTTCCAATTTGTTGA 2145 0.4699 MEATTLTNAQNGSFCLPSAKTTDPLNWGTAAEALKGSHLDEVKRMVAEYRQPLVRLGGETLTIAQVAAVSGHDQGVRVELSESAREGVKASSEWVMNSMNNGTDSYGVTTGFGATSHRRTKQGGALQKELIRFLNAGIFGNGTESSHTLPHTATRAAMLVRINTLLQGYSGIRFEILESITKLLNNNVTPCLPLRGTITASGDLVPLSYIAGLLTGRPNSKAVGPSGEVLTAKQAFELANINSEFYELQPKEGLALVNGTAVGSGMASIVLFDANILAVLSEVLSAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSSYMKDAKKLHEIDPLQKPKQDRYALRTSPQWLGPLIEVIRFSTKSIEREINSVNDNPLIDVSRNKALHGGNFQGTPIGVSMDNTRLALASIGKLMFAQFSELVNDFYNNGLPSNLTASRNPSLDYGFKGAEIAMASYCSELQYLANPVTSHVQSAEQHNQDVNSLGLISARKTNESIEILKLMSSTFLMGLCQAIDLRHLEENLKSSVKNTVSQVSKRTLTTGGNGELHPSRFCEKDLLKVVDREYVFSYIDDPCSGTYPLMQKLRQVLVDHALINAENEKDVNTSIFQKIATFEEELKTILPKEVESTRAAYESGKAAIPNKIKECRSYPLYKFVREELGTGLLTGEKVKSPGEEFDKLFTAICQGKIIDPLLECLGEWNGAPLPIC* 715
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g1843 714 Pfam Aromatic amino acid lyase 61 536 IPR001106 -
Pvu1g1843 714 Gene3D - 527 648 IPR023144 -
Pvu1g1843 714 SUPERFAMILY L-aspartase-like 23 714 IPR008948 GO:0003824
Pvu1g1843 714 PANTHER PHENYLALANINE AMMONIA-LYASE 1-LIKE 19 714 - -
Pvu1g1843 714 TIGRFAM phe_am_lyase: phenylalanine ammonia-lyase 23 703 IPR005922 GO:0005737|GO:0006559|GO:0016841
Pvu1g1843 714 PANTHER HISTIDINE AMMONIA-LYASE 19 714 IPR001106 -
Pvu1g1843 714 Gene3D Fumarase/aspartase (Central domain) 261 709 - -
Pvu1g1843 714 Gene3D - 15 260 IPR024083 -
Pvu1g1843 714 CDD PAL-HAL 59 524 IPR001106 -
Pvu1g1843 714 ProSitePatterns Phenylalanine and histidine ammonia-lyases signature. 196 212 IPR022313 GO:0016841
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu1g1843 Pvu-Chr1 44150743 44154391 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu1g1843 23 714 Monolignol Biosynthesis Gene Families AT2G37040 83.526 0.0 1239
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu1g1843 K10775 - gmx:100811101 1328.92
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu1g1843 1 44150743 44154391 Pvu7g1548 7 37020027 37024239 PCT