Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g1842 ACAAGCCATGTCCAAAGTGCTGAGCAACACAACCAAGATGTGAACTCTTTGGGTTTGATTTCAGCTAGGAAGACAAATGAATCTATTGAAATCCTTAAGCTCATGTCTTCCACGTTCTTGATGGGACTTTGCCAAGCAATTGACTTGAGGCATTTGGAGGAGAATTTGAAAAGCTCGGTCAAGAACACTGTGAGTCAAGTTTCCAAGAGGACTCTTACCACAGGTGGCAACGGAGAACTCCATCCTTCAAGATTTTGCGAAAAGGATCTGCTGAAAGTGGTTGACAGGGAGTATGTATTTTCCTACATAGATGACCCATGCAGTGGTACATACCCACTGATGCAAAAACTTAGGCAAGTGCTTGTAGACCATGCCTTGATAAATGCAGAGAATGAGAAGGATGTCAACACATCAATCTTTCAAAAGATTGCAACCTTTGAGGAGGAGTTGAAGACCATCTTGCCAAAGGAGGTTGAAAGTACAAGGGCTGCTTATGAGAGTGGGAAAGCTGCGATTCCAAACAAGATAAAAGAATGCAGATCTTACCCACTCTACAAGTTTGTGAGAGAGGAGTTGGGCACTGGGTTGCTAACTGGAGAAAAGGTGAAGTCACCAGGTGAAGAGTTTGACAAATTATTCACAGCAATATGCCAGGGCAAAATTATTGATCCTCTACTCGAATGCCTTGGAGAGTGGAATGGAGCTCCTCTTCCAATATGTTAA 723 0.4302 TSHVQSAEQHNQDVNSLGLISARKTNESIEILKLMSSTFLMGLCQAIDLRHLEENLKSSVKNTVSQVSKRTLTTGGNGELHPSRFCEKDLLKVVDREYVFSYIDDPCSGTYPLMQKLRQVLVDHALINAENEKDVNTSIFQKIATFEEELKTILPKEVESTRAAYESGKAAIPNKIKECRSYPLYKFVREELGTGLLTGEKVKSPGEEFDKLFTAICQGKIIDPLLECLGEWNGAPLPIC* 241
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g1842 240 Pfam Aromatic amino acid lyase 2 63 IPR001106 -
Pvu1g1842 240 Gene3D - 53 174 IPR023144 -
Pvu1g1842 240 PANTHER HISTIDINE AMMONIA-LYASE 1 240 IPR001106 -
Pvu1g1842 240 Gene3D Fumarase/aspartase (Central domain) 1 235 - -
Pvu1g1842 240 SUPERFAMILY L-aspartase-like 2 240 IPR008948 GO:0003824
Pvu1g1842 240 PANTHER PHENYLALANINE AMMONIA-LYASE 1-LIKE 1 240 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu1g1842 Pvu-Chr1 44144036 44144760 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu1g1842 1 240 Monolignol Biosynthesis Gene Families AT2G37040 79.167 2.87e-145 421
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu1g1842 K10775 - pvu:PHAVU_001G1777000 480.715
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu1g1842 1 44144036 44144760 Pvu7g0985 7 10062183 10065569 ECH
Pvu1g1842 1 44144036 44144760 Pvu1g1842 1 44144036 44144760 ECH
Pvu7g1548 7 37020027 37024239 Pvu1g1842 1 44144036 44144760 ECH