Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g1841 ATGGAAGCAACTACCCTTACCAACGCCCACCAAAACTGTTCCTTCTGCCTCCCGTCCGCCAAGACCACTGATCCTCTCAATTGGGGAACGGCCGCGGAGGCGCTCAAGGGGAGCCACCTCGACGAGGTCAAGCGCATGGTGGCCGAATACCGCCAGCCGCTGGTCCGCCTCGGCGGCGAGACGCTCACCATCGCTCAGGTGGCAGCGGTGTCTGGCCACGACCAAGGCGTGAGGGTGGAGCTGTCGGAGTCCGCTAGGGAAGGTGTTAAGGCGAGCAGTGATTGGGTGATGAACAGCATGAACAATGGCACTGATAGTTACGGCGTCACCACCGGCTTCGGTGCCACCTCACACCGCCGAACCAAACAAGGCGGTGCTCTGCAGAAAGAACTCATCAGGTTTTTAAACGCTGGAATATTTGGAAATGGGACTGAATCATCCCACACTCTGCCACACACTGCAACTAGAGCAGCCATGTTAGTGAGGATCAACACTCTTCTCCAAGGTTACTCAGGCATCAGATTTGAAATCTTAGAATCCATCACCAAGCTCCTTAACAACAACGTTACCCCATGTTTGCCACTTCGTGGTACAATCACAGCTTCTGGAGATCTTGTTCCACTTTCCTATATTGCTGGTTTGCTCACTGGCAGACCTAACTCCAAAGCTGTTGGACCTTCTGGAGAAGTACTTACTGCTAAGCAAGCTTTTGAATTGGCTAACATCAATTCTGAGTTCTATGAATTGCAACCCAAGGAAGGCCTTGCCCTTGTTAATGGCACGGCTGTCGGTTCTGGCATGGCTTCTATAGTTCTCTTTGATGCAAATATACTAGCTGTGTTGTCTGAAGTTCTATCAGCTATTTTTGCCGAAGTGATGCAAGGGAAACCTGAGTTTACTGATCATTTGACACACAAGTTGAAGCACCACCCTGGTCAAATTGAGGCTGCTGCCATTATGGAGCACATTTTGGATGGAAGTTCCTACATGAAGGATGCTAAGAAGCTGCATGAAATAGATCCGTTGCAAAAACCAAAACAAGATAGATATGCCCTCAGAACTTCACCACAGTGGCTTGGTCCTCTCATTGAAGTCATTCGTTTCTCCACCAAGTCAATTGAGAGAGAGATTAACTCCGTGAATGACAACCCTCTTATTGATGTTTCAAGGAACAAGGCATTGCATGGTGGTAATTTCCAAGGAACCCCAATTGGAGTCTCCATGGACAACACTC 1234 0.4927 MEATTLTNAHQNCSFCLPSAKTTDPLNWGTAAEALKGSHLDEVKRMVAEYRQPLVRLGGETLTIAQVAAVSGHDQGVRVELSESAREGVKASSDWVMNSMNNGTDSYGVTTGFGATSHRRTKQGGALQKELIRFLNAGIFGNGTESSHTLPHTATRAAMLVRINTLLQGYSGIRFEILESITKLLNNNVTPCLPLRGTITASGDLVPLSYIAGLLTGRPNSKAVGPSGEVLTAKQAFELANINSEFYELQPKEGLALVNGTAVGSGMASIVLFDANILAVLSEVLSAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSSYMKDAKKLHEIDPLQKPKQDRYALRTSPQWLGPLIEVIRFSTKSIEREINSVNDNPLIDVSRNKALHGGNFQGTPIGVSMDNT 411
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g1841 411 SUPERFAMILY L-aspartase-like 24 411 IPR008948 GO:0003824
Pvu1g1841 411 Gene3D Fumarase/aspartase (Central domain) 262 411 - -
Pvu1g1841 411 CDD PAL-HAL 60 411 IPR001106 -
Pvu1g1841 411 PANTHER PHENYLALANINE AMMONIA-LYASE 1-LIKE 20 411 - -
Pvu1g1841 411 Pfam Aromatic amino acid lyase 62 410 IPR001106 -
Pvu1g1841 411 PANTHER HISTIDINE AMMONIA-LYASE 20 411 IPR001106 -
Pvu1g1841 411 Gene3D - 16 261 IPR024083 -
Pvu1g1841 411 TIGRFAM phe_am_lyase: phenylalanine ammonia-lyase 24 411 IPR005922 GO:0005737|GO:0006559|GO:0016841
Pvu1g1841 411 ProSitePatterns Phenylalanine and histidine ammonia-lyases signature. 197 213 IPR022313 GO:0016841
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu1g1841 Pvu-Chr1 44141798 44143846 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu1g1841 24 411 Monolignol Biosynthesis Gene Families AT2G37040 84.278 0.0 689
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu1g1841 K10775 - gmx:100787902 761.525