Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g1834 ATGGCCAAGGACATCCAAACTGAGTCCGAGGTACCAACTGGGTTGACCCACAAGGACTACTACGACCCACCCCCAGCCCCATTATACGACGCCGCCGAGCTCCGCAAGTGGTCCTTTTATAGGGCCCTCATCGCCGAGTTCGTCGCCACCCTCCTCTTCCTCTACATCACCATCCTCACTGTCATCGGCTACAACCACCAGATCAATGCCGGCGACTCCTGCGAAGGCGTAGGCATCCTCGGCATCGCCTGGGCCTTCGGCGGCATGATTTTCGTCCTCGTCTACTGCACCGCGGGCATTTCCGGGGGTCACATAAACCCCGCCGTCACGTTCGGGTTGTTTCTTGCTAGGAAGGTGTCGCTAGTGAGAGCAATTGCGTACATTGTGGCTCAGTGCTTGGGAGCTATATCTGGCGTGGGTCTGGTAAAGGCGTTCCAGAAGAGCTACTACAACAGGTACAATGGTGGCGTGAACTTGCTCTCTGATGGGTACAGCAAAGGCGCTGGCTTGGGCGCAGAGATTATTGGCACCTTTGTTCTTGTCTACACCGTCTTCTCCGCCACCGATCCCAAGAGAAAAGCCAGAGATTCCCATGTTCCCGTTTTGGCACCACTTCCAATCGGGTTCGCGGTGTTCATGGTTCACTTAGCCACCATCCCTGTCACCGGCACTGGCATCAACCCCGCCAGAAGCCTTGGCCCTGCTGTCATATTTAACAACCAGAAGGCATGGGATGACCAGTGGATGTTCTGGGTTGGACCCTTCGTGGGTGCAGGCATTGCTGCTGTCTACCACCAGTACGTATTGAGGGCACAAGCGGCAAAGGCTCTCGGGTCATTCAGGAGCTTTTCAAACCTGTAA 861 0.5575 MAKDIQTESEVPTGLTHKDYYDPPPAPLYDAAELRKWSFYRALIAEFVATLLFLYITILTVIGYNHQINAGDSCEGVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRAIAYIVAQCLGAISGVGLVKAFQKSYYNRYNGGVNLLSDGYSKGAGLGAEIIGTFVLVYTVFSATDPKRKARDSHVPVLAPLPIGFAVFMVHLATIPVTGTGINPARSLGPAVIFNNQKAWDDQWMFWVGPFVGAGIAAVYHQYVLRAQAAKALGSFRSFSNL* 287
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g1834 286 PANTHER AQUAPORIN OR AQUAGLYCEROPORIN RELATED 1 282 IPR034294 -
Pvu1g1834 286 CDD MIP 41 268 IPR000425 GO:0015267|GO:0016020|GO:0055085
Pvu1g1834 286 PANTHER AQUAPORIN PIP2-4-RELATED 1 282 - -
Pvu1g1834 286 Pfam Major intrinsic protein 33 265 IPR000425 GO:0015267|GO:0016020|GO:0055085
Pvu1g1834 286 SUPERFAMILY Aquaporin-like 33 270 IPR023271 -
Pvu1g1834 286 Gene3D Glycerol uptake facilitator protein. 26 285 IPR023271 -
Pvu1g1834 286 PRINTS Major intrinsic protein family signature 41 60 IPR000425 GO:0015267|GO:0016020|GO:0055085
Pvu1g1834 286 PRINTS Major intrinsic protein family signature 86 110 IPR000425 GO:0015267|GO:0016020|GO:0055085
Pvu1g1834 286 PRINTS Major intrinsic protein family signature 123 142 IPR000425 GO:0015267|GO:0016020|GO:0055085
Pvu1g1834 286 PRINTS Major intrinsic protein family signature 172 190 IPR000425 GO:0015267|GO:0016020|GO:0055085
Pvu1g1834 286 PRINTS Major intrinsic protein family signature 208 230 IPR000425 GO:0015267|GO:0016020|GO:0055085
Pvu1g1834 286 PRINTS Major intrinsic protein family signature 248 268 IPR000425 GO:0015267|GO:0016020|GO:0055085
Pvu1g1834 286 ProSitePatterns MIP family signature. 104 112 IPR022357 -
Pvu1g1834 286 TIGRFAM MIP: MIP family channel proteins 45 264 IPR000425 GO:0015267|GO:0016020|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu1g1834 Pvu-Chr1 44052908 44055413 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu1g1834 1 286 Major Intrinsic Protein MIP AT2G37170 76.125 1.20e-161 451
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu1g1834 K09872 - gmx:100785783 493.041
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu1g1834 1 44052908 44055413 Pvu7g0969 7 9797812 9800701 ECH
Pvu1g1834 1 44052908 44055413 Pvu1g1834 1 44052908 44055413 ECH
Pvu7g1559 7 37339423 37341140 Pvu1g1834 1 44052908 44055413 ECH
Pvu1g1834 1 44052908 44055413 Pvu5g1398 5 36324908 36326497 ECH