Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g1832 ATGAAGATTCCTTGTTCTTTTTGCACTTGTTTCTCAGCATCGGTCAAAGAACATCACACTGAGCACGAAGAGCCAGGTGAAGATAATGATGGAAACTTTCGCATATTCACTTATAGAGAATTGAATTCCGCCACGCGGGGTTTTCATCCCTCGGAAAAGATTGGAGAAGGAGGCTTTGGCTCCGTCTACAAGGGGCAGCTTCGGGATGGAAGTTTGGTGGCTGTTAAAGTGCTTTTGATTGAGCTAGATTCCTTAAGTGGAGAGAAGGGGTTTGTGGCAGAATTGAATACACTGGCAAATATCAAGCACCAAAATCTAGTTATTCTTCGAGGGTGCTGTGTTGAAGGAGCCCACAGATACATAGTCTACGATTATATGGAAAACAACAGCCTCCGTCAAACTTTCTTAGCTTCTGAGCAAAAAAGAATGGCATTCAGCTGGGAGGCTCGGATGGGTGTATCAATAGGTGTAGCAAGAGCGCTTGCCTTTCTCCATGAGGAACTTCAACCCCATATTGTGCACAGAGATATCAAATCCAGCAATGTTCTTCTTGATGGAAATTTGACACCAAAAGTCTCAGATTTTGGCCTGGCCAAGTTACTAAGAGAAGAAAAATCCTACATCAGTACCCGAGTTGCAGGCACACTAGGTTATATTGCTCCGGACTATGCCAGTTCTGGCCACCTGACACGAAAATCAGATGTTTATAGTTTTGGAGTACTACTTCTAGAGATTGTCAGTGGCCAAAGAGCAGTAGATGAACATCAAGATGTGGATCGTTTCTTAGTTGAGAAGTCTTGGGCAGCGTACGAGGGTAATGATCTTTTGAGAATGGTGGATCCAATGCTGAAGATGAACTATCCAAAGGAAGAAGCTAAACGGTTCCTAATGGTGGGACTTTGTTGCGTGCAAGAAACGACCAGGACCAGGCCACGAATGTCAGAGGTTGTAAACATGTTGAGCAACAACACTGAGATGGGAGAGTTTCATATTTCACGACCAGGATTTGTTAATGATATGAGGAACCTCAAAATGAAGAGGCAGCTAAATTCGTTAGAGGAATCAAGTGCTACGGCAGCAACCTTTGCAGATTCCTCCGGATGGAGTACCTCCAATCTTGCTCGTTAG 1128 0.4415 MKIPCSFCTCFSASVKEHHTEHEEPGEDNDGNFRIFTYRELNSATRGFHPSEKIGEGGFGSVYKGQLRDGSLVAVKVLLIELDSLSGEKGFVAELNTLANIKHQNLVILRGCCVEGAHRYIVYDYMENNSLRQTFLASEQKRMAFSWEARMGVSIGVARALAFLHEELQPHIVHRDIKSSNVLLDGNLTPKVSDFGLAKLLREEKSYISTRVAGTLGYIAPDYASSGHLTRKSDVYSFGVLLLEIVSGQRAVDEHQDVDRFLVEKSWAAYEGNDLLRMVDPMLKMNYPKEEAKRFLMVGLCCVQETTRTRPRMSEVVNMLSNNTEMGEFHISRPGFVNDMRNLKMKRQLNSLEESSATAATFADSSGWSTSNLAR* 376
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g1832 375 ProSitePatterns Protein kinases ATP-binding region signature. 54 76 IPR017441 GO:0005524
Pvu1g1832 375 CDD STKc_IRAK 54 320 - -
Pvu1g1832 375 SMART serkin_6 48 320 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pvu1g1832 375 ProSitePatterns Serine/Threonine protein kinases active-site signature. 172 184 IPR008271 GO:0004672|GO:0006468
Pvu1g1832 375 PANTHER RECEPTOR-LIKE KINASE 9 350 - -
Pvu1g1832 375 Gene3D Transferase(Phosphotransferase) domain 1 126 332 - -
Pvu1g1832 375 Gene3D Phosphorylase Kinase; domain 1 17 125 - -
Pvu1g1832 375 ProSiteProfiles Protein kinase domain profile. 48 326 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pvu1g1832 375 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 9 350 - -
Pvu1g1832 375 Pfam Protein tyrosine and serine/threonine kinase 51 320 IPR001245 GO:0004672|GO:0006468
Pvu1g1832 375 SUPERFAMILY Protein kinase-like (PK-like) 30 336 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu1g1832 Pvu-Chr1 44029349 44031573 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu1g1832 36 339 Receptor kinase-like Gene Family AT1G56120 49.180 1.85e-91 291
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Pvu1g1832 PK_Tyr_Ser-Thr 3.4e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu1g1832 - - gmx:100790388 564.303
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu1g1832 1 44029349 44031573 Pvu7g2270 7 46019744 46021945 PCT