Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g1831 ATGGGCAACATCTCAAGCGGCGGCGCCAACCCCCGTCGCCGGCACAGTGGAGCGTCAAGGCGGAGTCACCCGCCGCCTCCTCCGCCGGTGACGCCGCAGCCTGAGATCGCCGCGAATCCATTCGTGTACCATGGTGCTGCACCTTATCCGAACCCACCCCTGCATTACCCGCAGTACCATTACCCCGGTTACTACCCTCCGGGGCCTCCCATGCCTCATCAGCATCATCATCAACAACATCAACAGCATCAACATCCTCATCAACAACATCAACATCAACATCCTCTGCACATGAACCCGGCGTGGATTCCAGGGCGTTACCCTTGTGGGCCCATGATGCCTAACCCCGCACCTTTTGTTGAGCACCAGAAGGCCGTTACCATAAGGAACGATGTCAATATCAGGAAAGAGACTCTTAGGCTTGAACCCGATGAGGGAAATTCTTCCCACTTCCTTATCTCGTTTTCCTTCGATGCCACCGTTTCTGGGAGCGTCACCATTTATTTCTTTGCAAAAGAAGGTGAAGACTGCATCCTAACACCAATGAAGGAAAACAGTCCTGCTCCAGTGACTGTGAATTTTGAGCAAGGTCTTGGCCAGAAGTTTAGGCAGCCATCTGGAACTGGTATTGATTTTTCTGTTTTTGAGGAGTCCGAGTTACTTAAAGTGGGTGACATGGATGTATACCCGCTAGCAGTAAAGGCAGACGCATCCCCTAGTAATCATGATGAGTCAGATAGAACTCCAACATCTGGTAACAGCACAAACTCACAGATTACCCAAGCAGTGTTTGAGAAGGAGAAAGGAGAGTTCCGACTGAAAGTTATTAAGCAGATCTTGTGGGTGAATGGAATGAGGTATGAGCTGCAGGAGATATATGGCATTGGAAATTCAACAGAAGCTGACGTGGATGAGAGTGACCAAGGAAAAGAATGTGTCATCTGCTTGTCGGAGCCTCGAGATACAATTGTTCATCCCTGTCGCCATATGTGTATGTGTAGTGGATGTGCGAAGGTTTTGAGGTTCCAGACAAATAGATGCCCAATTTGCAGACAACCAGTTGAGAGGCTTTTGGAGATAAAGGTAGGGGGCTGA 1095 0.4968 MGNISSGGANPRRRHSGASRRSHPPPPPPVTPQPEIAANPFVYHGAAPYPNPPLHYPQYHYPGYYPPGPPMPHQHHHQQHQQHQHPHQQHQHQHPLHMNPAWIPGRYPCGPMMPNPAPFVEHQKAVTIRNDVNIRKETLRLEPDEGNSSHFLISFSFDATVSGSVTIYFFAKEGEDCILTPMKENSPAPVTVNFEQGLGQKFRQPSGTGIDFSVFEESELLKVGDMDVYPLAVKADASPSNHDESDRTPTSGNSTNSQITQAVFEKEKGEFRLKVIKQILWVNGMRYELQEIYGIGNSTEADVDESDQGKECVICLSEPRDTIVHPCRHMCMCSGCAKVLRFQTNRCPICRQPVERLLEIKVGG* 365
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g1831 364 MobiDBLite consensus disorder prediction 76 92 - -
Pvu1g1831 364 MobiDBLite consensus disorder prediction 21 35 - -
Pvu1g1831 364 MobiDBLite consensus disorder prediction 64 92 - -
Pvu1g1831 364 ProSiteProfiles Zinc finger RING-type profile. 312 351 IPR001841 -
Pvu1g1831 364 CDD mRING-HC-C3HC5_MGRN1_like---blasttree 311 351 IPR045195 -
Pvu1g1831 364 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 295 361 IPR013083 -
Pvu1g1831 364 PANTHER MAHOGUNIN 1 363 IPR045194 GO:0061630
Pvu1g1831 364 PANTHER E3 UBIQUITIN-PROTEIN LIGASE 1 363 - -
Pvu1g1831 364 MobiDBLite consensus disorder prediction 1 36 - -
Pvu1g1831 364 MobiDBLite consensus disorder prediction 244 258 - -
Pvu1g1831 364 MobiDBLite consensus disorder prediction 235 258 - -
Pvu1g1831 364 Pfam Zinc finger, C3HC4 type (RING finger) 310 356 - -
Pvu1g1831 364 SMART ring_2 312 350 IPR001841 -
Pvu1g1831 364 SUPERFAMILY RING/U-box 311 356 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu1g1831 Pvu-Chr1 44022555 44027489 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu1g1831 35 331 C3H Transcription Factor Family AT3G09770 55.229 3.67e-101 301
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu1g1831 - - gmx:100807343 523.472
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu1g1831 1 44022555 44027489 Pvu1g1831 1 44022555 44027489 ECH
Pvu1g1831 1 44022555 44027489 Pvu7g2271 7 46029894 46034485 PCT