Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g1827 ATGTTCAATGTTATCGGTTCTTCGTTGTTGACAATGGATTCGGTGGCGTACAGGGGATTGCTCTACACATTCTTCATACTCAATTTCGTTTTGGTCTGCCAACTCATTCTCCTTCACCCTCTCGTTTCTGCTTCCGATGGAAATCCTGAAAATGCTGCTGAGTTGTTTGAGCGGGCATCGCAAAGCGTAAAAGTGAAACACTATACTGAGGCACTTAATGATCTAAATGCTGCAATAGAAGCAGACCCAACCCTTTCAAAAGCATACCTTTTCAGAGCCTCAGTTCTTCGTCAGATATGCAGATATGAGCAATCCGAGAGGAGCTACAAAAAGTTTCTGGAGTTAAAGCCTGGAGATTCAGTTGCAGAAAAGGAGCTCTCTCAACTATTGCAGGCTCAAAGTGCCCTAGAAACAGCTCAGTCCCTCCATGATTTGGGCAACTTCTCAAAATCTTTGGAATTTATTGATAAAGTTGTTCTTGTTTTCTCTCCAGATTGCACTAAGGCCAAGCTTCTTAAAGTGAAGGTGTTAATAGCTGATAAAGAATATGAGGGTGCCATTGCTGAGTCAGGGTTTCTTCTCAAGGAGGATGAAAATAATTTAGAGGCATTGTTGTTACGTGGTCGAGCATATTACTATTTAGCTGATCATGATGTTGCCACGAGGCATTTTCAGAAAGGTCTTCGCTCAGATCCAGAGCACAGTGAACTGAAAAAAGCATATTTTGGATTGAAAAATCTACTAAAGAAGAGTAAAAGTGCTGAAGATAATGCGAGTAAGGGTAAACTACGTGTGGCAGTGGAAGAATTCAAAGCTGCTCTTGCTGTAGACCCTAACCATCTTGCGCACAATGTACATCTTCATCTTGGCTTATGTAAAGTGCTAGTCAAGCTTGGCAGAGGAAAAGATGCCTTGGAAAGTTGTAGTGAAGCTCTTAAGATCAATGAAGAACTTGTTGAAGCTCTTGTTCAGAGAGGAGAAGCTAAACTCTTAATAGAGGATTGGGAGGGAGCTGTGGATGATATGAAATCAGCTGCTCAAAAATCTCCTCAGGATATGAGTATCCGTGAAGCAGTAATGAGGGCGGAGAAAGCTTTAAAGATAAGCAAACGTAAGGATCACTACAAGACTTTGGGAATTTCAAAAACTGCTTCTGCCGCTGATATAAAACGTGCCTACAAGAAACTAGCCTTACAATGGCACCCAGATAAGAATGTCGACAAAAGAGAAGAAGCAGAGGCTAAATTCCGAGAAATTGCTGCTGCATATGAGGTTCTTAGCGATGAAGACAAACGCGTAAGATATGACAGGGGGGAGGACCTTGACGAGATGGGAATGGGCGGCGGTGGCGGCGGTGGTTTCAACCCTTTTGGTGGTGGAGGCCAGCAGTTTACCTTTAATTTTGAGGGTGGCTTCCCTGGTGGTGGTGGATTTGGAGGGGGCTTTCCTGGAGGGTTTGAATTTCACTTCTGA 1473 0.4331 MFNVIGSSLLTMDSVAYRGLLYTFFILNFVLVCQLILLHPLVSASDGNPENAAELFERASQSVKVKHYTEALNDLNAAIEADPTLSKAYLFRASVLRQICRYEQSERSYKKFLELKPGDSVAEKELSQLLQAQSALETAQSLHDLGNFSKSLEFIDKVVLVFSPDCTKAKLLKVKVLIADKEYEGAIAESGFLLKEDENNLEALLLRGRAYYYLADHDVATRHFQKGLRSDPEHSELKKAYFGLKNLLKKSKSAEDNASKGKLRVAVEEFKAALAVDPNHLAHNVHLHLGLCKVLVKLGRGKDALESCSEALKINEELVEALVQRGEAKLLIEDWEGAVDDMKSAAQKSPQDMSIREAVMRAEKALKISKRKDHYKTLGISKTASAADIKRAYKKLALQWHPDKNVDKREEAEAKFREIAAAYEVLSDEDKRVRYDRGEDLDEMGMGGGGGGGFNPFGGGGQQFTFNFEGGFPGGGGFGGGFPGGFEFHF* 491
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g1827 490 Pfam Tetratricopeptide repeat 261 317 - -
Pvu1g1827 490 SMART tpr_5 201 234 IPR019734 GO:0005515
Pvu1g1827 490 SMART tpr_5 285 318 IPR019734 GO:0005515
Pvu1g1827 490 SMART tpr_5 319 352 IPR019734 GO:0005515
Pvu1g1827 490 SMART tpr_5 52 85 IPR019734 GO:0005515
Pvu1g1827 490 SMART tpr_5 132 165 IPR019734 GO:0005515
Pvu1g1827 490 SMART tpr_5 86 119 IPR019734 GO:0005515
Pvu1g1827 490 ProSiteProfiles TPR repeat profile. 201 234 IPR019734 GO:0005515
Pvu1g1827 490 ProSitePatterns Nt-dnaJ domain signature. 416 435 IPR018253 -
Pvu1g1827 490 Gene3D DnaJ domain 371 480 IPR036869 -
Pvu1g1827 490 CDD DnaJ 373 428 IPR001623 -
Pvu1g1827 490 PRINTS DnaJ domain signature 375 393 IPR001623 -
Pvu1g1827 490 PRINTS DnaJ domain signature 393 408 IPR001623 -
Pvu1g1827 490 PRINTS DnaJ domain signature 411 431 IPR001623 -
Pvu1g1827 490 PRINTS DnaJ domain signature 431 450 IPR001623 -
Pvu1g1827 490 Coils Coil 409 429 - -
Pvu1g1827 490 SMART dnaj_3 372 431 IPR001623 -
Pvu1g1827 490 Pfam DnaJ domain 373 436 IPR001623 -
Pvu1g1827 490 ProSiteProfiles TPR repeat profile. 86 119 IPR019734 GO:0005515
Pvu1g1827 490 SUPERFAMILY TPR-like 46 368 IPR011990 GO:0005515
Pvu1g1827 490 SUPERFAMILY Chaperone J-domain 367 478 IPR036869 -
Pvu1g1827 490 Pfam Tetratricopeptide repeat 65 119 - -
Pvu1g1827 490 PANTHER DNAJ PROTEIN P58IPK HOMOLOG 9 490 IPR044620 -
Pvu1g1827 490 Gene3D Tetratricopeptide repeat domain 42 370 IPR011990 GO:0005515
Pvu1g1827 490 ProSiteProfiles dnaJ domain profile. 373 439 IPR001623 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu1g1827 Pvu-Chr1 43974342 43978642 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu1g1827 369 436 C2H2 Transcription Factor Family AT1G74250 47.222 5.27e-11 63.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu1g1827 K09523 - gmx:100804685 774.237
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu1g1827 1 43974342 43978642 Pvu1g1827 1 43974342 43978642 ECH