Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g1826 ATGCAAATGATACCCAGTGACCCCTTTTCACTATCCACTACCCTCCCAGGGCTTCCCAATGAACAAAACACAAACCCTAACCCTAATCCTCCCCCTCCACTTACCAAGAAGAAGAGAAACCTACCAGGAACACCAGATCCAGATGCTGAGGTTATTGCTCTTTCACCAAAGACTCTCATGGCCACGAACCGTTTCATCTGTGAAATATGCAACAAAGGGTTCCAGAGGGACCAGAACCTTCAGCTTCATAGGAGGGGTCACAACCTTCCATGGAAGCTACGACAGAGGTCAAACAAAGAGGTTCGGAAGAAGGTATATATCTGTCCAGAGAAGACCTGTGTCCACCACCACGCCGCCAGGGCTCTCGGCGACCTCACCGGAATAAAAAAGCACTATAGCAGAAAACACGGTGAGAAGAAGTGGAAGTGTGAAAAGTGCTCCAAAAAATACGCTGTTCAATCTGATTGGAAAGCTCACACCAAAACCTGTGGCACCAGAGAGTATAAGTGCGACTGTGGCACCCTCTTCTCCAGGAAGGACAGCTTTATTACTCACAGGGCTTTCTGCGATGCCTTAGTCGAAGAGAGTTCGAGACTCTCCTCAGTTTCTACCAGTAGTCTAAATTTCAAGAGCGAAGATGCAACTGTGATGAATACACAGGCTGGTTTGTCGTCACATGGATTAATCACTGGTCAGGGAATGCAGAGTGTTCCGCACTTTGGTCCACATGGGTTTCGTTTAATGGGAATGGGTGCAGACCAACAAAGACCAAACTTGTCACTGTGGTTGAATCAGGGAAATCATCACATCAATAACCCACTTGATGTGGCATCATCAAGTTCTTCAGGTTTGCCTGAGGTTGTGCAAATTGCACAGGCTAATAATGCCTTGATTGGTTCTTCTTCAATATTCTCCAATTTTGGAATGCCTGCATCCAATTCAAAGGGAGAAGGTGGAGCTTCCGATTTGGCATCTATTTATTCTGAGAGTCAAAACAAGAATTCAATCTCAGCTTCCCCAATGTCGGCCACTGCCCTTTTGCAGAAGGCAGCACAAATGGGTTCCACCAGAAGCACCAACCCTTCAATTTTCAGAGGCAGTTTTGGAGTGATGAGCTCATCTTCCGCCCAGAGTACTAGTCTCAATAGCAATGCAAACCAAAGTTGTGATCAACTTAACCAAGCCTTTCAGAACTTTAACCAACATGAGAATTTCAATGGATCAAGCAGCAGTGCAACTATGTTGGGCAGTTCTACTGACTTTAGCTCATTGACACATTCATCAAACGGTTTTGATCAGTTTCTGATGCAAAACAATGTGGAACCAACTCAGCTAAAGCTCCATCCAGTCTCAAACACAGTGGAACATAACTTGACAAGAGATTTTCTTGGCATGAGTAGAAATGGAGGTGGACATCCCTTTCTACCCCAAGAGCTGGTCAAGTTTGCTTCCTTAGGCTCATCAATGGGTTTGAACCAATTCACTGCAGCCCATCAATGA 1500 0.4547 MQMIPSDPFSLSTTLPGLPNEQNTNPNPNPPPPLTKKKRNLPGTPDPDAEVIALSPKTLMATNRFICEICNKGFQRDQNLQLHRRGHNLPWKLRQRSNKEVRKKVYICPEKTCVHHHAARALGDLTGIKKHYSRKHGEKKWKCEKCSKKYAVQSDWKAHTKTCGTREYKCDCGTLFSRKDSFITHRAFCDALVEESSRLSSVSTSSLNFKSEDATVMNTQAGLSSHGLITGQGMQSVPHFGPHGFRLMGMGADQQRPNLSLWLNQGNHHINNPLDVASSSSSGLPEVVQIAQANNALIGSSSIFSNFGMPASNSKGEGGASDLASIYSESQNKNSISASPMSATALLQKAAQMGSTRSTNPSIFRGSFGVMSSSSAQSTSLNSNANQSCDQLNQAFQNFNQHENFNGSSSSATMLGSSTDFSSLTHSSNGFDQFLMQNNVEPTQLKLHPVSNTVEHNLTRDFLGMSRNGGGHPFLPQELVKFASLGSSMGLNQFTAAHQ* 500
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g1826 499 SMART c2h2final6 106 136 IPR013087 -
Pvu1g1826 499 SMART c2h2final6 141 161 IPR013087 -
Pvu1g1826 499 SMART c2h2final6 65 87 IPR013087 -
Pvu1g1826 499 PANTHER ZINC FINGER PROTEIN JACKDAW 7 486 IPR033243 GO:0003700
Pvu1g1826 499 MobiDBLite consensus disorder prediction 1 48 - -
Pvu1g1826 499 ProSiteProfiles Zinc finger C2H2 type domain profile. 65 87 IPR013087 -
Pvu1g1826 499 MobiDBLite consensus disorder prediction 23 38 - -
Pvu1g1826 499 MobiDBLite consensus disorder prediction 1 22 - -
Pvu1g1826 499 ProSitePatterns Zinc finger C2H2 type domain signature. 67 87 IPR013087 -
Pvu1g1826 499 Gene3D Classic Zinc Finger 121 198 - -
Pvu1g1826 499 SUPERFAMILY beta-beta-alpha zinc fingers 64 161 IPR036236 -
Pvu1g1826 499 Gene3D Classic Zinc Finger 43 120 - -
Pvu1g1826 499 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 7 486 - -
Pvu1g1826 499 Pfam Zinc-finger double-stranded RNA-binding 65 87 IPR022755 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu1g1826 Pvu-Chr1 43953139 43955620 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu1g1826 1 486 IDZ Gene Family AT5G03150 47.928 1.40e-136 402
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Pvu1g1826 zf-C2H2_jaz 7.3e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu1g1826 K25870 - gmx:100812495 812.372
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu1g1826 1 43953139 43955620 Pvu1g1826 1 43953139 43955620 ECH
Pvu1g1826 1 43953139 43955620 Pvu7g2276 7 46069938 46073937 PCT