Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g1824 ATGGGTCATAGGCACGTATATAACACATCTCCATTGTTCGAGGGTGAGCCTGACCAGAACTGGAATCATATGCACATTGATCAACACTATGTGCACCTTGGTAGAACTAGCACTTCAGAGAATGGTTCTTTTATTTATCCTACGGACAATATGTCTATAGATAGCATTTCTTTCCCCTCTCATTGGAACTCTTCCACAAGGTCAAATGGATATGCATCCTCAGGTCTCAACCTTGATGTACCTCCTCATCAGCCAGATGCATCAGGCACTTCTAATGATCATTTTGTGCATTCGTCTAGTGCTGGAGCGTTCTTTACGGTGTCCGATAATCACGTACTCCAACCTTCTTCCAATTATGACAGACAGACATTTCATGTTGATAGTGGTTTTGTTGATCTTACAATGGGAAGTGGTCAAGGGCCTCACAAGCGTAAGAGCCCTGGAATTTGTCCAGTCTATGAGAGAGGAAGTACAAGTAGATACTTCAATGCTGGAAGTTCAACTGATGTTCCTATACCTTCGGAATTATGGCAGGAGAAGCCAAATATTGATTCTCAATATATTCCCTGGGATCATTTTACTATGACACCATCATTCAGAGGTACTGGCCTTTCAATAAAGGGTGAGGGTTCTTTGCGGAATGTGAGGAGCCGCCCTGCACTTGATTTGGATTCCAATCCATCTAGAACCCATTTATCAACTAATCATTCACACAATTCGTACCCTACTCTCCCACCAGTAGACCATTCTAGTTTGGTGGATGTTTCTGGTCAGACTTCTGCTACATTGACAAGGGATTGGAGCCAAATGAACATATCTCCAGCTAATGGAAGGGTTTTATTACCAGATACAAGTGCTTTTGGTCTTGACACAAGTCATTTCCTTGGTGGAAGTGGTGCTACTGTTAGCAATGCTTCTGTAGATGTTGGGTGCTTCCATCATGATTTTGGTACAAGCAGAAATCCTGCTCCCCCTCTAAGTTTTCAAAATAATCAAACTCAGACTGCTAGGGGAATTCAAAGCAACTATTCTCAGAGATCCACTCCAGCAATTAGGGCTTCTTCAAGCTTGCGCATGGGACATGTGACATCTTTGGATGAAGGATTGCCTATGGTAGCTGAAAGTTACTCTTCTAGACATCCAAGGCCATTGAGCACCCATGGCTGGCGGAATGGTGATAGAAATGGGAGATCAAGAATTTCAAGTCAAAGATATCGTTCGTTGACGGAGGAGAGTGGTCTCGCTGAACGATTTGCCTCGGAGGGTATCTTGGTTGTTGAGCGTGGATCGGTGTATGCTTCCAGGAATATGCTTGATCAGCACCGAGAAATGAGAATGGACATAGATAACATGAGTTACGAGGACCTACTTGCACTAGGTGAAAGGATTGGCAGTGTGAACACAGGGGTCTCTGAGGATTTGTTTTCCAAATGTTTGACGGAAACAATATATTGTTCATCTGAGCAAAGTCAAGACGAAGGAAACTGTGTAATATGTCTGGAAGATTACAAGAACATGGATGATGTTGGAACACTTAAAACTTGTGGACATGACTACCATGTGAACTGCATTAAAAAGTGGTTATCTATGAAGAAATTATGCCCTATCTGCAAAGCATCTGCTTTGGCTGAGGATACAAGGGATAAATAA 1650 0.4273 MGHRHVYNTSPLFEGEPDQNWNHMHIDQHYVHLGRTSTSENGSFIYPTDNMSIDSISFPSHWNSSTRSNGYASSGLNLDVPPHQPDASGTSNDHFVHSSSAGAFFTVSDNHVLQPSSNYDRQTFHVDSGFVDLTMGSGQGPHKRKSPGICPVYERGSTSRYFNAGSSTDVPIPSELWQEKPNIDSQYIPWDHFTMTPSFRGTGLSIKGEGSLRNVRSRPALDLDSNPSRTHLSTNHSHNSYPTLPPVDHSSLVDVSGQTSATLTRDWSQMNISPANGRVLLPDTSAFGLDTSHFLGGSGATVSNASVDVGCFHHDFGTSRNPAPPLSFQNNQTQTARGIQSNYSQRSTPAIRASSSLRMGHVTSLDEGLPMVAESYSSRHPRPLSTHGWRNGDRNGRSRISSQRYRSLTEESGLAERFASEGILVVERGSVYASRNMLDQHREMRMDIDNMSYEDLLALGERIGSVNTGVSEDLFSKCLTETIYCSSEQSQDEGNCVICLEDYKNMDDVGTLKTCGHDYHVNCIKKWLSMKKLCPICKASALAEDTRDK* 550
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g1824 549 CDD RING-H2_TTC3 495 538 - -
Pvu1g1824 549 SMART ring_2 496 537 IPR001841 -
Pvu1g1824 549 MobiDBLite consensus disorder prediction 221 243 - -
Pvu1g1824 549 Pfam Ring finger domain 495 538 IPR001841 -
Pvu1g1824 549 MobiDBLite consensus disorder prediction 218 243 - -
Pvu1g1824 549 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 462 542 IPR013083 -
Pvu1g1824 549 MobiDBLite consensus disorder prediction 376 406 - -
Pvu1g1824 549 SUPERFAMILY RING/U-box 486 541 - -
Pvu1g1824 549 MobiDBLite consensus disorder prediction 69 91 - -
Pvu1g1824 549 ProSiteProfiles Zinc finger RING-type profile. 496 538 IPR001841 -
Pvu1g1824 549 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 1 545 - -
Pvu1g1824 549 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 1 545 IPR045191 GO:0061630
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu1g1824 Pvu-Chr1 43916297 43925159 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu1g1824 1 548 C3H Transcription Factor Family AT2G37150 40.541 3.90e-111 340
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu1g1824 - - gmx:100803627 971.074
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu1g1824 1 43916297 43925159 Pvu1g1824 1 43916297 43925159 ECH
Pvu1g1824 1 43916297 43925159 Pvu7g2279 7 46110997 46119518 PCT