Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g1820 ATGGCCGATGACTTCGAGTTCGCAGATAAAGTTCCTCCTTCGTTCGATCGAGTGGCCTCAAACCAAGGGTTCAACCCAGGCTTAATTGTCCTCCTGGTTGTTGGTGGGTTGCTGTTGACATTTCTCATTGGAAATTTTGTGCTCTACACGTATGCACAGAAGACCCTCCCTCCTAGGAAAAAGAAGCCTGTTTCAAAGAAAAAGATGAAAAAGGAGAGACTGAAGCAAGGTGTTTCTGCACCTGGAGAGTAG 252 0.4643 MADDFEFADKVPPSFDRVASNQGFNPGLIVLLVVGGLLLTFLIGNFVLYTYAQKTLPPRKKKPVSKKKMKKERLKQGVSAPGE* 84
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g1820 83 MobiDBLite consensus disorder prediction 59 83 - -
Pvu1g1820 83 Pfam DNA binding protein S1FA 20 83 IPR006779 GO:0003677|GO:0005634|GO:0006355
Pvu1g1820 83 PANTHER DNA-BINDING PROTEIN S1FA1-RELATED 3 83 - -
Pvu1g1820 83 PANTHER DNA-BINDING PROTEIN S1FA2 3 83 IPR006779 GO:0003677|GO:0005634|GO:0006355
Pvu1g1820 83 MobiDBLite consensus disorder prediction 59 73 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu1g1820 Pvu-Chr1 43891696 43893910 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF S1Fa-like Pvu1g1820 S1FA 3.9e-40 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu1g1820 - - gmx:100500059 134.806