Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g1816 ATGGCCAGCGACTCGTCGTTTTTGTTTTCCGGCATTCGTTTCAACAGAAAGAAGTTCGGCGTCGATATCGCCAGGTTCCAGAAAAAGGAGAGCGATACTGATTCGACGAAGATTTCGAGCGTTGCCGAAGACGAAAGCGCGAAAAGTAGGGAAGCAGTAGAAGAGAAAACAACGTCCACGAAGAAGAGGAAGCGCAAGGGAAACTCTTCCGGTATTCACATTCTCCGGGACGCGATATTCAGAAAGCAGCACAACATTCATGTCTCTGGTTATAATGTACCGTCTCCTCTTCAAAGCTTTGACGAGTTGAAATCAAGATATAACTGTCCATCGTATTTGTTGCGCAATCTGAAGGAGCTTGGATTCAAACTACCAACGCCTATTCAAAGACAGGCTATTCCAGTACTTTTAGATGGTCGTGAATGCTTTGCGTGTGCACCAACTGGTTCTGGGAAAACCCTTGCATTTGTATGTCCAATGTTTATGAAGCTTAAGTTAATGACTAAAAATCTCTTAAGAAATGCTGATTTTTCAAAGTTTCCATGTGATATAATATCTACACCACTCCGATTACGTTTGGCTATCAAGAAGAAGAAGATTGATCTCAGCAGAGTTGAGTATCTTGTCCTCGATGAATCGGATAAGCTTTTTGAGCCTGAATTATTCAAGCAGATTGATTCTGTTCTGAAGGCATTCTCCAACCCATCAATCATACGCTCACTTTTCTGTGCTACTTTACCTGATTTTGTTGAAGATCGAGCTCGAGAACTTATGCATGACGCTGTTCGTGTAATTGTTGGCAGGAATCTAAATCCTCCAGTATTGGTCTTTCTCCAAAGCAAGGAACGAGCCAAGGAGCTGTATGGCGAACTTGCATTTGACAACATTAGAGTTGATGTGATTCATTCTGATCTGTCTCAACAAGAGCGAGAAAATGCTGTTGATAACTTCAGAGCTGGAAAAACATGGGTTTTGATTGCTACTGATGTGGTTGCCCGGGGCATGGATTTCAAAGGTGTGAACTGTGTGATCAATTATGATTTCCCTGATTCTGCCTCCGCATATGTCCACAGAATTGGTCGTTCTGGCAGAGCAGGGAGGACTGGAGAAGCGATTACTTTTTACACAGAGGAAGACATTCCATTCCTGCGGAATGTTGCTAATCTTATGGCAGCATCGGGCTGTGAAGTTCCATCCTGGCTCATGGAGTTGCAGAAAAAGAAGTGGAAGAAGCACCGGCCCAAAAGAGATTCAATCTCAACAAAACCAGAAACAGCATAG 1281 0.4325 MASDSSFLFSGIRFNRKKFGVDIARFQKKESDTDSTKISSVAEDESAKSREAVEEKTTSTKKRKRKGNSSGIHILRDAIFRKQHNIHVSGYNVPSPLQSFDELKSRYNCPSYLLRNLKELGFKLPTPIQRQAIPVLLDGRECFACAPTGSGKTLAFVCPMFMKLKLMTKNLLRNADFSKFPCDIISTPLRLRLAIKKKKIDLSRVEYLVLDESDKLFEPELFKQIDSVLKAFSNPSIIRSLFCATLPDFVEDRARELMHDAVRVIVGRNLNPPVLVFLQSKERAKELYGELAFDNIRVDVIHSDLSQQERENAVDNFRAGKTWVLIATDVVARGMDFKGVNCVINYDFPDSASAYVHRIGRSGRAGRTGEAITFYTEEDIPFLRNVANLMAASGCEVPSWLMELQKKKWKKHRPKRDSISTKPETA* 427
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g1816 426 Gene3D - 248 410 IPR027417 -
Pvu1g1816 426 SMART helicmild6 285 366 IPR001650 -
Pvu1g1816 426 Gene3D - 76 175 IPR027417 -
Pvu1g1816 426 MobiDBLite consensus disorder prediction 28 61 - -
Pvu1g1816 426 CDD SF2_C_DEAD 249 375 - -
Pvu1g1816 426 Pfam Helicase conserved C-terminal domain 271 366 IPR001650 -
Pvu1g1816 426 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 102 130 IPR014014 GO:0003724
Pvu1g1816 426 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 133 378 IPR027417 -
Pvu1g1816 426 MobiDBLite consensus disorder prediction 28 69 - -
Pvu1g1816 426 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 57 269 423 - -
Pvu1g1816 426 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 57 166 268 - -
Pvu1g1816 426 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 57 18 165 - -
Pvu1g1816 426 Pfam DEAD/DEAH box helicase 184 251 IPR011545 GO:0003676|GO:0005524
Pvu1g1816 426 Pfam DEAD/DEAH box helicase 126 164 IPR011545 GO:0003676|GO:0005524
Pvu1g1816 426 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 269 423 - -
Pvu1g1816 426 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 166 268 - -
Pvu1g1816 426 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 18 165 - -
Pvu1g1816 426 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 184 264 IPR014001 -
Pvu1g1816 426 CDD DEADc_DDX52 113 267 IPR044764 GO:0003724|GO:0005524|GO:0030490
Pvu1g1816 426 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 245 405 IPR001650 -
Pvu1g1816 426 SMART ultradead3 121 277 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu1g1816 Pvu-Chr1 43860557 43864053 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu1g1816 96 404 Eukaryotic Initiation Factors Gene Family AT3G19760 27.368 5.22e-38 140
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu1g1816 K14779 - gmx:100800969 681.789
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu1g1816 1 43860557 43864053 Pvu1g1816 1 43860557 43864053 ECH