LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pvu1g1813	ATGGGGAAAACACGTGGAATGGGAGCTGCCCGCAAGCTGAAGTCCCACCGTAGAAGACAAAGATGGGCGGATAAGTCATACAAAAAGTCTCATCTTGGCAATGAATGGAAGAAGCCTTTCGCAGGTTCATCCCATGCCAAGGGAATTGTTCTAGAAAAGATAGGTATTGAGGCAAAACAGCCCAACTCTGCCATTCGTAAATGTGCCAGGGTTCAACTCATCAAAAATGGGAAGAAGATCGCTGCCTTTGTGCCAAACGATGGTTGTTTAAATTACATTGAAGAAAATGACGAGGTTTTGATCGCTGGATTTGGGCGTAAAGGTCACGCCGTGGGTGATATTCCTGGTGTGAGATTCAAGGTTGTAAAGGTTTCTGGGGTGTCTCTTCTTGCTCTCTTCAAGGAGAAGAAGGAGAAGCCAAGGTCATAA	429	0.4569	MGKTRGMGAARKLKSHRRRQRWADKSYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS*	143

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pvu1g1813	142	ProSitePatterns	Ribosomal protein S12 signature.	59	66	IPR006032	GO:0003735\|GO:0005840\|GO:0006412
	Pvu1g1813	142	PANTHER	30S RIBOSOMAL PROTEIN S12 FAMILY MEMBER	1	142	IPR006032	GO:0003735\|GO:0005840\|GO:0006412
	Pvu1g1813	142	MobiDBLite	consensus disorder prediction	1	30	-	-
	Pvu1g1813	142	SUPERFAMILY	Nucleic acid-binding proteins	20	140	IPR012340	-
	Pvu1g1813	142	Gene3D	-	25	142	IPR012340	-
	Pvu1g1813	142	PIRSF	RPS12p_RPS12a_RPS23e_RPS12o	16	142	IPR006032	GO:0003735\|GO:0005840\|GO:0006412
	Pvu1g1813	142	TIGRFAM	uS12_E_A: ribosomal protein uS12	6	141	IPR005680	GO:0003735\|GO:0006412\|GO:0015935
	Pvu1g1813	142	Pfam	Ribosomal protein S12/S23	31	141	IPR006032	GO:0003735\|GO:0005840\|GO:0006412
	Pvu1g1813	142	CDD	Ribosomal_S23	26	139	IPR005680	GO:0003735\|GO:0006412\|GO:0015935
	Pvu1g1813	142	MobiDBLite	consensus disorder prediction	9	25	-	-
	Pvu1g1813	142	PANTHER	BNACNNG03140D PROTEIN	1	142	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pvu1g1813	Pvu-Chr1	43824432	43826282	Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pvu1g1813	1	142	Cytoplasmic Ribosomal Protein Gene Family	AT5G02960	95.775	2.17e-96	272

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Pvu1g1813	K02973		-	fve:101303309	286.96

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Pvu1g1813	1	43824432	43826282	Pvu1g1812	1	43819915	43821716	ECH
	Pvu1g1813	1	43824432	43826282	Pvu1g1813	1	43824432	43826282	ECH
	Pvu1g1813	1	43824432	43826282	Pvu7g1683	7	39311481	39313177	ECH
	Pvu1g1813	1	43824432	43826282	Pvu7g1683	7	39311481	39313177	PCT