Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g1809 CAAATTAGGGTTTCTTCTTTTTTTCAATTTTGCCATGCTTTTCACCGATTATTCCTCTCTCAAATCAGGGTTCCGGCGAACATGGCCGACGGTCCGTCCAGTCCGGGAGGCGGCAGCCACGAGAGCGGTGACCACAGTCCCCGCTCTAACGTGCGCGAGCAGGACAGGTACCTCCCCATCGCTAACATAAGCCGCATCATGAAGAAGGCGCTCCCTGCTAACGGGAAAATAGCCAAAGACGCCAAAGAGACTGTTCAGGAGTGCGTTTCTGAGTTCATCAGCTTCATCACCAGCGAGGCCTCTGATAAGTGTCAGAGAGAGAAAAGAAAGACTATTAACGGGGACGATTTGCTCTGGGCAATGGCTACCCTTGGTTTCGAGGATTATATCGATCCCTTGAAGATTTACCTCACAAGATACCGAGAGATGGAGGGTGATACCAAGGGCTCAGCCAAGGGTGGAGAGACCTCTGCTAAGAAAGATGTTCAACCGAATCCTAATGCTCAGCTTGCTCATCAAGGTTCTTTTTCACAAGGTGTTAGTTACACAAATTCTCAGGTAACTATTCTCTCTTTGTTTGATGTATTATCTTCTTTCTTTTTGTTCTTCTGGGCTGTCAATGTTGAATGTTAA 633 0.4739 QIRVSSFFQFCHAFHRLFLSQIRVPANMADGPSSPGGGSHESGDHSPRSNVREQDRYLPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFEDYIDPLKIYLTRYREMEGDTKGSAKGGETSAKKDVQPNPNAQLAHQGSFSQGVSYTNSQVTILSLFDVLSSFFLFFWAVNVEC* 211
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g1809 210 MobiDBLite consensus disorder prediction 28 54 - -
Pvu1g1809 210 ProSitePatterns NF-YB/HAP3 subunit signature. 88 104 IPR003956 GO:0005634|GO:0006355|GO:0043565
Pvu1g1809 210 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 28 187 IPR027113 GO:0001228|GO:0006355|GO:0016602
Pvu1g1809 210 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-2-RELATED 28 187 - -
Pvu1g1809 210 PRINTS CCAAT-binding transcription factor subunit A signature 85 103 - -
Pvu1g1809 210 PRINTS CCAAT-binding transcription factor subunit A signature 104 122 - -
Pvu1g1809 210 PRINTS CCAAT-binding transcription factor subunit A signature 123 141 - -
Pvu1g1809 210 MobiDBLite consensus disorder prediction 146 168 - -
Pvu1g1809 210 Gene3D Histone, subunit A 43 178 IPR009072 GO:0046982
Pvu1g1809 210 SUPERFAMILY Histone-fold 54 157 IPR009072 GO:0046982
Pvu1g1809 210 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 57 121 IPR003958 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu1g1809 Pvu-Chr1 43764167 43765581 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu1g1809 44 186 CCAAT-HAP3 Transcription Factor Family AT3G53340 81.633 2.17e-83 243
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Pvu1g1809 CBFD_NFYB_HMF 1.7e-27 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu1g1809 K08065 - gmx:100798667 297.36
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu1g1809 1 43764167 43765581 Pvu1g1809 1 43764167 43765581 ECH
Pvu1g1809 1 43764167 43765581 Pvu7g1677 7 39251681 39254705 PCT