Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g1807 ATGCTGGATCTTAACCTCAACGCCGATTCCCCCTCCGACAACAACCACACGCCCCCGCTCTCCGTCGCTCAAATGGAGAGCTCCGGAAGCTTCAGTTCCTCCGTCGTCAATGCTGCCGACACCGATGACTCCTGCTCCTACGGCGACACCGTCGCCTACAACTTCGCCATCCTCAACAACAGCGCCTCCTTCTCCGCTGGAGAATCCTCCGTCCGCACCATCCAGCTCTTTCCGGCGACCGACTCCGGTGTCTCGCCGGCTTGGCTGGATGTCTCGTCGAAGGTGGATCAGCACGGTGTCGCGGCGGAGCAGATGATCACTCCGCGGCAGCCGCAGGTGAAGAAGAGCCGCCGAGGACCGAGGTCACGAAGCTCGCAGTATCGCGGCGTCACTTTCTATCGCAGAACAGGAAGATGGGAATCGCACATTTGGGATTGTGGCAAACAAGTGTACTTAGGTGGATTTGACACGGCGCATGCTGCGGCAAGGGCTTATGATCGAGCTGCGATCAAGTTCCGTGGGGTTGATGCGGATATCAATTTCAACGTTAGCGATTACGATGAGGATATAAAGCAGATGAGTAATTTCACGAAGGAGGAGTTTGTGCATATTCTGCGTCGACAGAGCACTGGTTTTTCAAGGGGAAGCTCCAAATACAGGGGAGTTACTCTGCATAAGTGCGGGCGATGGGAAGCTCGTATGGGGCAGTTTCTGGGTAAAAAGTATATATATCTTGGGCTATTCGACAGCGAATTAGAGGCTGCAAGAGCGTATGATAGGGCTGCTATAAAATGCAATGGAAGGGAAGCAGTTACAAATTTCGAGCCCAGCATATACGAAGGGGAGGTGATTTCCCAATCTGATAATGAAGATGGCAAGCAAAATCTTGATCTTAACCTGGGCATAGCTCCCCCTTCTTACTCTGACAGTCAAATCAAGAACACACCCAGCAACGGGAGTGGTTTGAAAACTCCACCCTGCTGGGATGATAGCCCTGTCGAAAAGAGATTTATGTTTGAGCACTCTGGATCGAGATCACTGAATGTCCAGCCATCTCATGGCATCTCCAGAGTATCTGGACATCATCCTTCCACCTGGAATGGTAGCAATTTCTTTCCCATCTACGAGGAAACAGCAATAGAGAAGAAGTTGGAAGCTGGTCCCATGCCTAGTTGGGCATGGCAAGTCCAAGGTCCTTATGGCGGGGCAAGTCTTACTCCACCATTCTCTACTGCAGCATCATCAGGATTCCCTTCAACAATAATACCATCAGCTGCGGATACTCAAATTCATTTTCCAAACATGACATTCCTCCACTCACATTTTCCACCATCAATCACTAACTCGAGCACTATATCCCCTTTCTTCATCGGTAGCTGA 1380 0.5087 MLDLNLNADSPSDNNHTPPLSVAQMESSGSFSSSVVNAADTDDSCSYGDTVAYNFAILNNSASFSAGESSVRTIQLFPATDSGVSPAWLDVSSKVDQHGVAAEQMITPRQPQVKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGVDADINFNVSDYDEDIKQMSNFTKEEFVHILRRQSTGFSRGSSKYRGVTLHKCGRWEARMGQFLGKKYIYLGLFDSELEAARAYDRAAIKCNGREAVTNFEPSIYEGEVISQSDNEDGKQNLDLNLGIAPPSYSDSQIKNTPSNGSGLKTPPCWDDSPVEKRFMFEHSGSRSLNVQPSHGISRVSGHHPSTWNGSNFFPIYEETAIEKKLEAGPMPSWAWQVQGPYGGASLTPPFSTAASSGFPSTIIPSAADTQIHFPNMTFLHSHFPPSITNSSTISPFFIGS* 460
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g1807 459 CDD AP2 126 184 IPR001471 GO:0003700|GO:0006355
Pvu1g1807 459 SMART rav1_2 126 188 IPR001471 GO:0003700|GO:0006355
Pvu1g1807 459 SMART rav1_2 218 281 IPR001471 GO:0003700|GO:0006355
Pvu1g1807 459 ProSiteProfiles AP2/ERF domain profile. 218 275 IPR001471 GO:0003700|GO:0006355
Pvu1g1807 459 Gene3D AP2/ERF domain 125 184 IPR036955 GO:0003700|GO:0006355
Pvu1g1807 459 Gene3D AP2/ERF domain 217 276 IPR036955 GO:0003700|GO:0006355
Pvu1g1807 459 ProSiteProfiles AP2/ERF domain profile. 126 182 IPR001471 GO:0003700|GO:0006355
Pvu1g1807 459 PRINTS Ethylene responsive element binding protein signature 219 230 IPR001471 GO:0003700|GO:0006355
Pvu1g1807 459 PRINTS Ethylene responsive element binding protein signature 257 277 IPR001471 GO:0003700|GO:0006355
Pvu1g1807 459 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 1 451 - -
Pvu1g1807 459 PANTHER AP2 DOMAIN TRANSCRIPTION FACTOR 1 451 - -
Pvu1g1807 459 MobiDBLite consensus disorder prediction 7 26 - -
Pvu1g1807 459 MobiDBLite consensus disorder prediction 1 26 - -
Pvu1g1807 459 CDD AP2 217 277 IPR001471 GO:0003700|GO:0006355
Pvu1g1807 459 SUPERFAMILY DNA-binding domain 217 277 IPR016177 GO:0003677
Pvu1g1807 459 Pfam AP2 domain 126 174 IPR001471 GO:0003700|GO:0006355
Pvu1g1807 459 Pfam AP2 domain 217 267 IPR001471 GO:0003700|GO:0006355
Pvu1g1807 459 SUPERFAMILY DNA-binding domain 125 184 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu1g1807 Pvu-Chr1 43723288 43726156 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu1g1807 101 311 AP2-EREBP Transcription Factor Family AT4G36920 77.103 1.22e-98 301
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-AP2 Pvu1g1807 AP2 1e-09 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu1g1807 K09284 - gmx:100808212 771.155
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu1g1807 1 43723288 43726156 Pvu1g1807 1 43723288 43726156 ECH