LGRPv2

Gene search

Sequence information

Show entries

Search:

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pvu1g1806	ATGGCAGCAGCAGCAGCAAGGCCTCTCGTATCCGTTCAAACCCTAGAGGGCGATGCAGCCCCCACCGTCCCTCTTCCTGATGTCATGAAGGCTCCCATTCGCCCTGACATTGTCAATTTCGTCCACTCCAACATTTCGCGCAACAGCCGCCAGCCTTACGCTGTCAGCAAGCGCGCCGGCCACCAGACATCCGCTGAGTCATGGGGTACCGGCCGCGCCGTATCGCGTATCCCTCGTGTGCCCGGCGGCGGCACGCACCGCGCTGGTCAGGCTGCCTTCGGCAACATGTGCCGCGGCGGGCGTATGTTCGCTCCCACCAAGATCTGGCGCCGCTGGCACCGCAAGATCAACGTTCAGCAGAAACGCCACGCCGTGGTCTCCGCCATCGCCGCCTCCGCGATACCCTCCTTGGTCCAGGCCCGCGGCCACCGCATCGAGTCTGTCCCTGAGCTCCCACTCGTTGTCAGCGACAGCATCGAGAGTGTGGAGAAGTCCAAAGAAGCGGTGAAAATTCTTCAGAAGATCGGCGCGTTCCCCGACGCGGAGAAAGCGAAACTGAGCCGCGGAATTCGTCCCGGCAAGGGGAAAATGAGGAACCGTAGGTACATTTCTCGCAGGGGTCCTCTTATCGTGTACGGATCTGAAGGGGCTAAAGCGGTTAAAGCGTTCAGGAACATTCCTGGTGTTGAGGTGGCAAATGTTGACAGGCTTAACCTTCTGAAGCTTGCACCCGGTGGCCACCTTGGGAGGTTTATTATCTGGACCAAGTCCGCGTTTGAGAAACTGGACTCCATTTATGGGTCTTTCGACAAGGTCTCCGAGAAAAAAAAGGGCTACCTTCTTCCCCGGGCCAAGATGGTTAACTCGGACTTGTCCCGTATCATTAATTCCGATGAGGTTCAGTCCGTGGTGAGGCCCGTTAATAAGGAGGTTAAGCGCGCTACTCTGAAGAAGAACCCTCTCAAGAACCTCAATGTCATGTTGAAGCTGAATCCCTATGCTAAGACCGCTAAAAGGATGGCTCTTCTCGCTGAGAAGCAGCGCCTTGTGGCCAAGAAGGAAAAGCTTGATCAGAAGCGCAACAATGTTTCAAAGGAGGAGGCTTCTGCTATCAGAGCTGCTGGAAAAGCGTGGTATCAAACTATGGTGTCAGACTCTGATTATACAGAGTTTGATAACTTCTCTAAGTGGCTGGGTGTTTCCCAGTGA	1209	0.555	MAAAAARPLVSVQTLEGDAAPTVPLPDVMKAPIRPDIVNFVHSNISRNSRQPYAVSKRAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQAAFGNMCRGGRMFAPTKIWRRWHRKINVQQKRHAVVSAIAASAIPSLVQARGHRIESVPELPLVVSDSIESVEKSKEAVKILQKIGAFPDAEKAKLSRGIRPGKGKMRNRRYISRRGPLIVYGSEGAKAVKAFRNIPGVEVANVDRLNLLKLAPGGHLGRFIIWTKSAFEKLDSIYGSFDKVSEKKKGYLLPRAKMVNSDLSRIINSDEVQSVVRPVNKEVKRATLKKNPLKNLNVMLKLNPYAKTAKRMALLAEKQRLVAKKEKLDQKRNNVSKEEASAIRAAGKAWYQTMVSDSDYTEFDNFSKWLGVSQ*	403

Showing 1 to 1 of 1 entries

Previous1Next

Annotation information

Show entries

Search:

Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Pvu1g1806	402	PANTHER	BNAC03G35890D PROTEIN	3	402	-	-
Pvu1g1806	402	Pfam	60S ribosomal protein L4 C-terminal domain	277	348	IPR025755	-
Pvu1g1806	402	Coils	Coil	339	369	-	-
Pvu1g1806	402	Pfam	Ribosomal protein L4/L1 family	23	263	IPR002136	GO:0003735\|GO:0005840\|GO:0006412
Pvu1g1806	402	ProSitePatterns	Ribosomal protein L1e signature.	117	143	IPR013000	-
Pvu1g1806	402	MobiDBLite	consensus disorder prediction	52	70	-	-
Pvu1g1806	402	Gene3D	-	4	305	IPR023574	GO:0003735\|GO:0005840\|GO:0006412
Pvu1g1806	402	MobiDBLite	consensus disorder prediction	52	87	-	-
Pvu1g1806	402	PANTHER	60S RIBOSOMAL PROTEIN L4	3	402	IPR045240	-
Pvu1g1806	402	SUPERFAMILY	Ribosomal protein L4	9	264	IPR023574	GO:0003735\|GO:0005840\|GO:0006412

Showing 1 to 10 of 10 entries

Previous1Next

Duplication type information

Show entries

Search:

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pvu1g1806	Pvu-Chr1	43708846	43710593	Dispersed/Wgd

Showing 1 to 1 of 1 entries

Previous1Next

Functional genes information

Show entries

Search:

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pvu1g1806	1	402	Cytoplasmic Ribosomal Protein Gene Family	AT3G09630	79.557	0.0	667

Showing 1 to 1 of 1 entries

Previous1Next

Pathway information

Show entries

Search:

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Pvu1g1806	K02930		-	gmx:100796712	738.028

Showing 1 to 1 of 1 entries

Previous1Next

Event-related genes

Show entries

Search:

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Pvu1g1806	1	43708846	43710593	Pvu1g1806	1	43708846	43710593	ECH
	Pvu1g1806	1	43708846	43710593	Pvu7g1675	7	39229824	39232224	PCT

Showing 1 to 2 of 2 entries

Previous1Next