Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g1806 ATGGCAGCAGCAGCAGCAAGGCCTCTCGTATCCGTTCAAACCCTAGAGGGCGATGCAGCCCCCACCGTCCCTCTTCCTGATGTCATGAAGGCTCCCATTCGCCCTGACATTGTCAATTTCGTCCACTCCAACATTTCGCGCAACAGCCGCCAGCCTTACGCTGTCAGCAAGCGCGCCGGCCACCAGACATCCGCTGAGTCATGGGGTACCGGCCGCGCCGTATCGCGTATCCCTCGTGTGCCCGGCGGCGGCACGCACCGCGCTGGTCAGGCTGCCTTCGGCAACATGTGCCGCGGCGGGCGTATGTTCGCTCCCACCAAGATCTGGCGCCGCTGGCACCGCAAGATCAACGTTCAGCAGAAACGCCACGCCGTGGTCTCCGCCATCGCCGCCTCCGCGATACCCTCCTTGGTCCAGGCCCGCGGCCACCGCATCGAGTCTGTCCCTGAGCTCCCACTCGTTGTCAGCGACAGCATCGAGAGTGTGGAGAAGTCCAAAGAAGCGGTGAAAATTCTTCAGAAGATCGGCGCGTTCCCCGACGCGGAGAAAGCGAAACTGAGCCGCGGAATTCGTCCCGGCAAGGGGAAAATGAGGAACCGTAGGTACATTTCTCGCAGGGGTCCTCTTATCGTGTACGGATCTGAAGGGGCTAAAGCGGTTAAAGCGTTCAGGAACATTCCTGGTGTTGAGGTGGCAAATGTTGACAGGCTTAACCTTCTGAAGCTTGCACCCGGTGGCCACCTTGGGAGGTTTATTATCTGGACCAAGTCCGCGTTTGAGAAACTGGACTCCATTTATGGGTCTTTCGACAAGGTCTCCGAGAAAAAAAAGGGCTACCTTCTTCCCCGGGCCAAGATGGTTAACTCGGACTTGTCCCGTATCATTAATTCCGATGAGGTTCAGTCCGTGGTGAGGCCCGTTAATAAGGAGGTTAAGCGCGCTACTCTGAAGAAGAACCCTCTCAAGAACCTCAATGTCATGTTGAAGCTGAATCCCTATGCTAAGACCGCTAAAAGGATGGCTCTTCTCGCTGAGAAGCAGCGCCTTGTGGCCAAGAAGGAAAAGCTTGATCAGAAGCGCAACAATGTTTCAAAGGAGGAGGCTTCTGCTATCAGAGCTGCTGGAAAAGCGTGGTATCAAACTATGGTGTCAGACTCTGATTATACAGAGTTTGATAACTTCTCTAAGTGGCTGGGTGTTTCCCAGTGA 1209 0.555 MAAAAARPLVSVQTLEGDAAPTVPLPDVMKAPIRPDIVNFVHSNISRNSRQPYAVSKRAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQAAFGNMCRGGRMFAPTKIWRRWHRKINVQQKRHAVVSAIAASAIPSLVQARGHRIESVPELPLVVSDSIESVEKSKEAVKILQKIGAFPDAEKAKLSRGIRPGKGKMRNRRYISRRGPLIVYGSEGAKAVKAFRNIPGVEVANVDRLNLLKLAPGGHLGRFIIWTKSAFEKLDSIYGSFDKVSEKKKGYLLPRAKMVNSDLSRIINSDEVQSVVRPVNKEVKRATLKKNPLKNLNVMLKLNPYAKTAKRMALLAEKQRLVAKKEKLDQKRNNVSKEEASAIRAAGKAWYQTMVSDSDYTEFDNFSKWLGVSQ* 403
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g1806 402 PANTHER BNAC03G35890D PROTEIN 3 402 - -
Pvu1g1806 402 Pfam 60S ribosomal protein L4 C-terminal domain 277 348 IPR025755 -
Pvu1g1806 402 Coils Coil 339 369 - -
Pvu1g1806 402 Pfam Ribosomal protein L4/L1 family 23 263 IPR002136 GO:0003735|GO:0005840|GO:0006412
Pvu1g1806 402 ProSitePatterns Ribosomal protein L1e signature. 117 143 IPR013000 -
Pvu1g1806 402 MobiDBLite consensus disorder prediction 52 70 - -
Pvu1g1806 402 Gene3D - 4 305 IPR023574 GO:0003735|GO:0005840|GO:0006412
Pvu1g1806 402 MobiDBLite consensus disorder prediction 52 87 - -
Pvu1g1806 402 PANTHER 60S RIBOSOMAL PROTEIN L4 3 402 IPR045240 -
Pvu1g1806 402 SUPERFAMILY Ribosomal protein L4 9 264 IPR023574 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu1g1806 Pvu-Chr1 43708846 43710593 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu1g1806 1 402 Cytoplasmic Ribosomal Protein Gene Family AT3G09630 79.557 0.0 667
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu1g1806 K02930 - gmx:100796712 738.028
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu1g1806 1 43708846 43710593 Pvu1g1806 1 43708846 43710593 ECH
Pvu1g1806 1 43708846 43710593 Pvu7g1675 7 39229824 39232224 PCT