Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g1805 ATGGCAATGGCGCCCTCAACTCCCTCTAGTGGCTCTGGCAAGAAGGTTAGAAAGCCTTATACTATCACCAAGTCTAGGGAGAGCTGGTCTGAGGAGGAGCATGACAAGTTTCTCGAAGCTCTTCAACTATTTGACAGAGATTGGAAGAAAATTGAGGATTTTGTTGGTTCAAAAACAGTTATTCAGATTAGAAGTCATGCCCAGAAGTACTTTCTGAAAGTTCAGAAGAACGGGACAGTAGCACATGTGCCTCCTCCTCGTCCTAAGCGTAAAGCTGCTCATCCTTACCCCCAAAAGGCATTCAAAAATGTTTTGGTGCCATTGCCAGCTTCCCTGGCATATGTTTCTTCCACTAGTACCCCTCCACCCGGGTATGCCACATGGGATGAAAAATTCTTGCTTATGAATTCTGGATCCAACAAATCACTGCCCTATCAGGATGAACTCACCAATCTTCATGGAGATGAAGCTGATATTGGATCAAAGGGGGTGACAATAATTGGCAGGAGCTGTCTTAGTGGTGTTGGGAACTCTACTAGAAAGTTGTCTGCTACGGAGATGCCAAAACAAGGGAAACAGACTCAGGTGCTTCATGGTTTACCAGATTTTGCTGAAGTTTATAGTTTCATTGGAAGTATTTTTGATCCAGACACAAAAGGCCATGTCCAGAAGCTGAAGGAGATGGATCCTATAAATTTTGAAACTGTTTTGTTGCTAATGAAAAACCTCACTCTCAACTTGTCTAGTCCTGACTTTGTGCCCGTTAGGAATGCCATCTCATCATACGATGCCAACGCGGAATTTCGGCGGCAGAAATTGATGTCAAGAAATAGACAAACGACCAATCATGTCAAACAGCTCAACAAACATTAA 873 0.4341 MAMAPSTPSSGSGKKVRKPYTITKSRESWSEEEHDKFLEALQLFDRDWKKIEDFVGSKTVIQIRSHAQKYFLKVQKNGTVAHVPPPRPKRKAAHPYPQKAFKNVLVPLPASLAYVSSTSTPPPGYATWDEKFLLMNSGSNKSLPYQDELTNLHGDEADIGSKGVTIIGRSCLSGVGNSTRKLSATEMPKQGKQTQVLHGLPDFAEVYSFIGSIFDPDTKGHVQKLKEMDPINFETVLLLMKNLTLNLSSPDFVPVRNAISSYDANAEFRRQKLMSRNRQTTNHVKQLNKH* 291
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g1805 290 Pfam Myb-like DNA-binding domain 26 71 IPR001005 -
Pvu1g1805 290 PANTHER SWI/SNF COMPLEX-RELATED 3 277 - -
Pvu1g1805 290 ProSiteProfiles Myb-like domain profile. 21 71 IPR001005 -
Pvu1g1805 290 PANTHER PROTEIN REVEILLE 8 3 277 - -
Pvu1g1805 290 SMART sant 25 73 IPR001005 -
Pvu1g1805 290 MobiDBLite consensus disorder prediction 1 16 - -
Pvu1g1805 290 CDD SANT 28 71 IPR001005 -
Pvu1g1805 290 SUPERFAMILY Homeodomain-like 20 76 IPR009057 -
Pvu1g1805 290 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 24 73 IPR006447 GO:0003677
Pvu1g1805 290 MobiDBLite consensus disorder prediction 1 27 - -
Pvu1g1805 290 Gene3D - 29 76 - -
Pvu1g1805 290 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 21 75 IPR017930 -
Pvu1g1805 290 ProSiteProfiles SANT domain profile. 24 77 IPR017884 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu1g1805 Pvu-Chr1 43704659 43707648 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Pvu1g1805 Myb_DNA-binding 1.1e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu1g1805 - - vra:106757230 497.664
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu1g1805 1 43704659 43707648 Pvu7g1674 7 39221146 39227655 PCT