Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g1800 ATGGATATTAAGGAAGCAGAAAGGGTGGTGATTGCCAAACCTGTTGCTTCAAGGCCTACTTGTTCTACTTTCAAATCTTTCTCAGAGCTCCTAGCTGGTGCAATCAATGTTTCTCCTGATATTGTGTCTTCTCAAGCAACAGTTTCTGCCATTAGACCCAAGACTGTGAGGTTCAAGCCTACAGCATTGAACCACCCCCCTGCTGGGTTTGATTCTTCTCAGGCAGATACTTTTGGAGCTGCACTTAGTAACCCTTCAGAAAAGAGTCTAAAACTTGACACCAATCAGTCCCTCATATACAAGCCAACGGCAAAACTCGTGTCAAAGACAACTGTGTCTCTTTTGGCAAATATGGGAAATTGCAGCACTGGTCAGCAGCAAACACGGCAATTAATGGAGGCCAATTTTCAACATTCCATCAATGAAAAATGTAGAACCAGCATGAGTTCACATCTTGATCAGAGTATTGCCCTGCATTCAGAAATAAATCAGATCAGTGAACCTAGTAAGATGGTGCAGCAGAACACAGAGGAAGACCAAAAGACTTTAACATCCTCAGCGAATTGTGATCGACCTTCTTATGATGGGTACAATTGGAGGAAATATGGTCAGAAGCAAGTAAAAGGGAGTGAGTACCCCCGAAGTTACTACAAGTGCACACATCCTAATTGTCCAGTGAAAAAGAAGGTTGAAAGATCATTTGATGGGCAGATTGCAGAAATTGTTTATAAAGGTGAGCACAACCATTCGAAGCCACAGCTTCCTAAACGAAACACAGCATCAGGGACACAAGGTTCGGGGGTAGTGTCTGATGGAATGGTTCAAGATATGTGGAGTAATAGTCACAGTGAGAGGAATGAAGGCAATGATAGTAGAGTTGATAACACTGGAGGACTCTCTGCGCTTTCAGATTATTATGTCAAAGTTCCACTGCCCAATGATTATGTTCTAAATATTGGTGCAACTAATGCTGGTGGAGGAAGCACGGAAAACTCCTGTGGTCTAAGTGGGGAATGTGAGGAAGCAAGCAAGGGTTTTGAGGCACATGAAGAAGAACCCAGAAGTAAAAGAAGGAAAAATGAGAATCACTGTAATGAAGTAGCATTATCAGAGGAAGGTTTAGTAGAGCCGCGGATTGTGATGCAAAGTTTCACAGATTCTGAAATACTTGGAGATGGATTTCGCTGGAGGAAATATGGGCAGAAGGTGGTGAAGGGTAATCCATATCCCAGAAGTTACTATAGGTGTACTAATATTAAGTGCAACGTTCGCAAACACGTGGAGAGAGCATTAGATGACCCGAGATCATTTGTGACGACATATGAGGGAAAACACAATCATGAAATGCCTCTGAAGAACACTGAAAGAGATTCACAGGCTTCTCTTAGTAAAGATAAACCACATAATTAA 1410 0.422 MDIKEAERVVIAKPVASRPTCSTFKSFSELLAGAINVSPDIVSSQATVSAIRPKTVRFKPTALNHPPAGFDSSQADTFGAALSNPSEKSLKLDTNQSLIYKPTAKLVSKTTVSLLANMGNCSTGQQQTRQLMEANFQHSINEKCRTSMSSHLDQSIALHSEINQISEPSKMVQQNTEEDQKTLTSSANCDRPSYDGYNWRKYGQKQVKGSEYPRSYYKCTHPNCPVKKKVERSFDGQIAEIVYKGEHNHSKPQLPKRNTASGTQGSGVVSDGMVQDMWSNSHSERNEGNDSRVDNTGGLSALSDYYVKVPLPNDYVLNIGATNAGGGSTENSCGLSGECEEASKGFEAHEEEPRSKRRKNENHCNEVALSEEGLVEPRIVMQSFTDSEILGDGFRWRKYGQKVVKGNPYPRSYYRCTNIKCNVRKHVERALDDPRSFVTTYEGKHNHEMPLKNTERDSQASLSKDKPHN* 470
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g1800 469 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 7 453 IPR044810 GO:0003700
Pvu1g1800 469 Pfam WRKY DNA -binding domain 195 249 IPR003657 GO:0003700|GO:0006355|GO:0043565
Pvu1g1800 469 Pfam WRKY DNA -binding domain 392 448 IPR003657 GO:0003700|GO:0006355|GO:0043565
Pvu1g1800 469 MobiDBLite consensus disorder prediction 245 271 - -
Pvu1g1800 469 ProSiteProfiles WRKY domain profile. 195 252 IPR003657 GO:0003700|GO:0006355|GO:0043565
Pvu1g1800 469 SUPERFAMILY WRKY DNA-binding domain 383 450 IPR036576 GO:0003700|GO:0006355|GO:0043565
Pvu1g1800 469 SMART WRKY_cls 390 449 IPR003657 GO:0003700|GO:0006355|GO:0043565
Pvu1g1800 469 SMART WRKY_cls 193 251 IPR003657 GO:0003700|GO:0006355|GO:0043565
Pvu1g1800 469 MobiDBLite consensus disorder prediction 442 469 - -
Pvu1g1800 469 Gene3D WRKY domain 376 451 IPR036576 GO:0003700|GO:0006355|GO:0043565
Pvu1g1800 469 Gene3D WRKY domain 175 253 IPR036576 GO:0003700|GO:0006355|GO:0043565
Pvu1g1800 469 ProSiteProfiles WRKY domain profile. 385 450 IPR003657 GO:0003700|GO:0006355|GO:0043565
Pvu1g1800 469 PANTHER WRKY TRANSCRIPTION FACTOR 44 7 453 - -
Pvu1g1800 469 MobiDBLite consensus disorder prediction 254 271 - -
Pvu1g1800 469 SUPERFAMILY WRKY DNA-binding domain 192 252 IPR036576 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu1g1800 Pvu-Chr1 43670815 43675762 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu1g1800 377 463 WRKY Transcription Factor Family AT2G37260 45.263 5.16e-16 77.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Pvu1g1800 WRKY 6.5e-25 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu1g1800 - - vra:106757963 846.269