Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g1799 ATGGGTTGGATTCCGTGTTCTGGATATTCAGGAACTAAGAACAAGATTGAGAAGATGGAAGTTCAGGACAGTCTCGTTGGTCAGATCAAAGCCACCCCAGCACAGACATTCCCATTCCGTGAATTGGCAACTGCAACTAGAAATTTTAGAACTGAATGTCTTTTGGGAGAGGGAGGCTTTGGTAGAGTGTACAAAGGGCGTCTGGAAAGTATTAATCAGGTTGTCGCCATTAAGCAACTTGACCGAAATGGACTCCAAGGAAATAGGGAATTCCTTGTTGAAGTGTTGATGTTAAGTCTACTTCATCATCCTAACCTTGTCAACCTTATTGGTTATTGTGCTGATGGAGATCAAAGGCTTCTGGTTTATGAATATATGCCATTAGGATCCTTGGAAGACCACTTGCATGACATTCCTCTTGGCAAGAAACAACTAGAGTGGAACACGCGAATGAGAATAGCTGCTGGTGCAGCAAAGGGATTGGAATATCTACACGACAAAGCTAATCCTCCTGTCATCTACCGTGATTTAAAGTGCTCTAACATATTGCTTGGTGAAGGGTATCACCCAAAGTTATCTGATTTTGGTTTGGCTAAGCTTGGCCCAGTTGGGGAAAACACACATGTATCAACTAGAGTTATGGGCACCTATGGATATTGTGCTCCAGAGTATGCCATGACTGGTCAACTGACTCTGAAATCAGATGTTTATAGCTTTGGTGTAGTTCTTCTGGAAATAATTACCGGAAGGAAAGCAATTGACAATTCAAAATCTGCAGGAGAGCAGAATCTTGTTGCATGGGCTAGACCCTTGTTTAGGGATCGAAGAAAGTTTTCACAAATGGCTGATCCAACACTCCAAGGTCAATATCCTCCAAGAGGACTATACCAGGCTCTTGCTGTTGCAGCAATGTGTGTTCAGGAGCAGGCTAACATGCGTCCAGTTATAGCTGATGTTGTCACAGCTTTGTCTTACCTTGCTAAACAAAAATATGATCCCAATACACACACAGTTCAAAACTCTCGCCTTGCTCCGGGTACTCCTCCTAGAACCAGGAGGGGGCTATGA 1068 0.4345 MGWIPCSGYSGTKNKIEKMEVQDSLVGQIKATPAQTFPFRELATATRNFRTECLLGEGGFGRVYKGRLESINQVVAIKQLDRNGLQGNREFLVEVLMLSLLHHPNLVNLIGYCADGDQRLLVYEYMPLGSLEDHLHDIPLGKKQLEWNTRMRIAAGAAKGLEYLHDKANPPVIYRDLKCSNILLGEGYHPKLSDFGLAKLGPVGENTHVSTRVMGTYGYCAPEYAMTGQLTLKSDVYSFGVVLLEIITGRKAIDNSKSAGEQNLVAWARPLFRDRRKFSQMADPTLQGQYPPRGLYQALAVAAMCVQEQANMRPVIADVVTALSYLAKQKYDPNTHTVQNSRLAPGTPPRTRRGL* 356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g1799 355 CDD STKc_IRAK 55 323 - -
Pvu1g1799 355 PANTHER SERINE/THREONINE-PROTEIN KINASE PBL7-RELATED 12 353 - -
Pvu1g1799 355 MobiDBLite consensus disorder prediction 336 355 - -
Pvu1g1799 355 Pfam Protein tyrosine and serine/threonine kinase 53 321 IPR001245 GO:0004672|GO:0006468
Pvu1g1799 355 ProSitePatterns Serine/Threonine protein kinases active-site signature. 172 184 IPR008271 GO:0004672|GO:0006468
Pvu1g1799 355 Gene3D Phosphorylase Kinase; domain 1 9 125 - -
Pvu1g1799 355 SUPERFAMILY Protein kinase-like (PK-like) 29 323 IPR011009 -
Pvu1g1799 355 Gene3D Transferase(Phosphotransferase) domain 1 126 344 - -
Pvu1g1799 355 ProSitePatterns Protein kinases ATP-binding region signature. 55 78 IPR017441 GO:0005524
Pvu1g1799 355 PIRSF ILK 11 339 - -
Pvu1g1799 355 ProSiteProfiles Protein kinase domain profile. 49 326 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pvu1g1799 355 PANTHER OS07G0668900 PROTEIN 12 353 - -
Pvu1g1799 355 SMART serkin_6 49 326 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu1g1799 Pvu-Chr1 43664366 43667791 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu1g1799 12 326 Glycoside Hydrolase AT3G07070 68.254 5.32e-160 452
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-1 Pvu1g1799 PK_Tyr_Ser-Thr 9e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu1g1799 - - gmx:100818024 679.478
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu1g1799 1 43664366 43667791 Pvu7g1669 7 39070612 39074262 PCT