Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g1790 ATGCCTCGCTATGATGATAAATATGGCAATACACGCCTGTACGTGGGACGCTTGTCTCAGAATACCCGTTCCCGTGATCTGGAGCGTGTTTTCGGCAGATATGGAAGAGTTCGAGGTGTGGATATGAAGAATGATTTCGCCTTTGTTGAATTTAGCGATCCTCGGGATGCGGATGATGCTAGATATAACTTGGATGGCCGTGACTTTGAAGGAAGTCGTATTATTGTTGAATTTGCCAAGGGGGGTCCACGTGGTTCTCGTGAATACTTGGGTCGGGGTCCACCTCCTGGATCTGGACGATGCTTTAACTGTGGCATTGATGGTCATTGGGCCCGAGATTGCAAAGCTGGGGATTGGAAGAACAAATGCTACCGCTGTGGGGAAAGAGGTCATATAGAGAAGAACTGCAAGAACAGTCCCAAAAAGCTGAGCACCAGCAGGCGTGGCCGGAGTCTTTCACGATCACCAGTCAGATCATGGTCTCCTCGTCGTGGGAGAAGCAGGGATCGAAGCTACAGCCGTGACCGCAGCTACAGTCGATCTAGATCTCCTGTCAGAAGAGCAAGAAGCCCAGTTTCTGAAGATAGGTCACGGAGTCCTCGGCCTTCCAAGATAAGGAAGCATAGTGCATCACCGGACCGTAGCAGCCCACAGAAGAGAAGTGACACATCTCCCCCTAATGATGATAGGTTGGTCACTCAGCGAGATGGGTCTGACTTGAGTGATGGTCCAAGAGGGAAAAGTCGAAGCCCTGCTAGTCCTGCAAGGGACCGGAATGTGAGGGGCTATGATAGCCCTAAATCTAATGGGCGCAGCCGGAGCCCCAGCCGGAGCCCTAGGGATGATGACAGGAGCCCCATTGATGAAGATGATGACAATCCTCGCCGCTCACAATCACCCTAG 903 0.5183 MPRYDDKYGNTRLYVGRLSQNTRSRDLERVFGRYGRVRGVDMKNDFAFVEFSDPRDADDARYNLDGRDFEGSRIIVEFAKGGPRGSREYLGRGPPPGSGRCFNCGIDGHWARDCKAGDWKNKCYRCGERGHIEKNCKNSPKKLSTSRRGRSLSRSPVRSWSPRRGRSRDRSYSRDRSYSRSRSPVRRARSPVSEDRSRSPRPSKIRKHSASPDRSSPQKRSDTSPPNDDRLVTQRDGSDLSDGPRGKSRSPASPARDRNVRGYDSPKSNGRSRSPSRSPRDDDRSPIDEDDDNPRRSQSP* 301
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g1790 300 Gene3D - 91 118 - -
Pvu1g1790 300 Gene3D - 119 151 - -
Pvu1g1790 300 ProSiteProfiles Zinc finger CCHC-type profile. 122 138 IPR001878 GO:0003676|GO:0008270
Pvu1g1790 300 ProSiteProfiles Zinc finger CCHC-type profile. 100 115 IPR001878 GO:0003676|GO:0008270
Pvu1g1790 300 MobiDBLite consensus disorder prediction 216 231 - -
Pvu1g1790 300 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 13 74 IPR000504 GO:0003723
Pvu1g1790 300 MobiDBLite consensus disorder prediction 274 300 - -
Pvu1g1790 300 SUPERFAMILY Retrovirus zinc finger-like domains 91 139 IPR036875 GO:0003676|GO:0008270
Pvu1g1790 300 SMART rrm1_1 12 77 IPR000504 GO:0003723
Pvu1g1790 300 MobiDBLite consensus disorder prediction 134 300 - -
Pvu1g1790 300 SMART c2hcfinal6 122 138 IPR001878 GO:0003676|GO:0008270
Pvu1g1790 300 SMART c2hcfinal6 100 116 IPR001878 GO:0003676|GO:0008270
Pvu1g1790 300 MobiDBLite consensus disorder prediction 162 215 - -
Pvu1g1790 300 Pfam Zinc knuckle 121 138 IPR001878 GO:0003676|GO:0008270
Pvu1g1790 300 Pfam Zinc knuckle 100 115 IPR001878 GO:0003676|GO:0008270
Pvu1g1790 300 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 11 81 IPR000504 GO:0003723
Pvu1g1790 300 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 6 280 - -
Pvu1g1790 300 Gene3D - 3 89 IPR012677 -
Pvu1g1790 300 PANTHER SERINE/ARGININE-RICH SPLICING FACTOR RS2Z33 6 280 - -
Pvu1g1790 300 SUPERFAMILY RNA-binding domain, RBD 7 100 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu1g1790 Pvu-Chr1 43606624 43609981 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu1g1790 6 70 Eukaryotic Initiation Factors Gene Family AT2G23350 34.722 8.97e-06 45.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu1g1790 K12896 - gmx:100813237 432.18
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu1g1790 1 43606624 43609981 Pvu1g1790 1 43606624 43609981 ECH