Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g1787 ATGTCTCATCTAACGCCGTCGTCGCCGCCGCCACAACCCAACACTACTCTCGACGACAGGCTTGCTTTCTTCAACCAATCCATGGACCTGGTTCAACTCCCAAACCTGCCCACAACCCGAACACGATCCCGCACCCTCGCCGATCTCCTAAAACGCGTCCAAGACGCCCAAAATGACCCACCCCCTGCACCACCCCATCATGTTCTTGACCTCTCCTCCTCCTCCACCATCCACCCCTTTGTCCTCTCCTTCTCCAACTTAACCTACAGCGTCAAGCTTCGCCGCAAGTTCACTTTTTTTCCCGCCACCACCGTTTCCTCTCCCGACCATGAAACTAAACCCAACGGCACCAAGACTCTCCTCAATGACATCTCTGGCGAGGCCAGGGACGGCGAGATCATGGCCGTCCTCGGCGCCAGCGGCTCTGGCAAGTCCACTCTCATCGACGCCCTCGCCAACCGCATCTCAAAGGAAAGCCTCAAAGGAACAGTCACCCTTAACGGCGACGTTTTAAACTCGAGTGTTTTAAAGGTGATTTCTGCATACGTCATGCAAGACGACCTCCTCTTCCCCATGCTCACCGTCGAAGAAACGCTCATGTTCGCAGCGGAGTTCAGACTCCCTCGCTCCCTCTCCAAATCCAAGAAGAAAGCACGCGTACAGGCCTTGATAGACCAGCTAGGTCTCCGCTCCGCTGCCTCCACCATAATCGGAGACGAGGGTCACCGCGGCGTATCCGGAGGCGAACGGCGCCGAGTCTCCATCGGAATCGACATCATCCACGACCCAATCGTGCTCTTCCTCGACGAACCAACTTCGGGCCTCGACTCCACCAGCGCCTTCATGGTGGTGAAAGTGCTGCAGCGAATCGCTCAAAGCGGAAGTATCGTTATCATGTCCATTCACCAACCTAGCTACAGAATCTTAGGCTTGTTGGACCACATGATCTTCCTCTCCCACGGTAACACCGTCTACAGCGGCTCTCCGACGAACCTCCCAGCCTTCTTCTCAGAGTTCGGCCACCCCATACCGGAGAACGAAAACCGCACCGAATTCGCACTCGACCTAATTCGCGAACTCGAAGAAGAACCCGGGGGGACCAAGAGTTTAGTGGACTTCAACAAATCGTGGCAGCTGAAAGAAAAAAACTCGGCTCAGGCTCAGAATGAGCCTAAAAACAAACCATCTCTGAAGGACGCCATCAGCGCTAGCATTTCCAGAGGGAAACTGGTGTCCGGCGCTAACGGTAACGGCAATAACTCAACGGCAGTTGTTTCTGTCCCCGCCTTCGCGAATCCGTTTTGGATGGAAATGGCGGTGATAGGAAAACGGTCGCTGAAGAACTCATGGAGGATGCCGGAGCTATTCGGGGTTCGTTTGGGTGCAGTTCTTGTGACGGGGACAATCTTGGCAACAATCTTCTGGCACCTGGATGATTCACCGAAAGGAGTTCAAGAGCGCGTGGGGTTCTTCGCCTTCGCCATGTCCACCACGTTTTACACGTGTGCCGAAGCCATCCCAGTGTTCCTCCAAGAGCGTTACATCTTCATGAGGGAGACCGCTTACAACGCCTACCGTCGCTCTTCCTACGTCCTCTCACACGCAATCATCTCACTCCCTTCCCTGGTTTTTCTCTCTTTCGCCTTCGCGGCCACCACCTTTTGGGCCGTGGGCCTGGCGGGCGGCTCTTCAGGCTTTGTCTTTTACTTTCTGGTGATCGTGGCCTCCTTCTGGGCCGGAAGCTCCTTCGTCACGTTCCTCTCGGGAGTGGTGTCGCACGTGATGATAGGGTTCACGGTGGTGGTTGCGATCCTTGCCTACTTTCTTCTCTTTAGCGGGTTCTTCATCAGCAGGGACAGAATCCCTCCCTACTGGTTATGGTTCCACTACCTATCGCTGGTGAAGTACCCGTACGAGGGAGTGCTGCAGAACGAGTTCGACGTTAACTCTCCGAGGTGCTTCGTGAGGGGGATTCAGATGTTCGATAACACGCCGTTGGGGATGGTGGCGGATACGCTGAAGGTGGAGCTGCTGAAGAGCATGAGCAACACGCTGGGCATGAACATCAGTAGGTCCACCTGCGTGATCACCGGAGCGGATGTGCTGAAGCAGCAGGGGATAACGCAGCTAAGCAAGTGGAGTTGCTTGTGGATCACGGTTGCATGGGGATTCTTCTTTCGCTTCCTCTTTTATTTGACGCTGCTCTTTGGGAGCAAGAACAAGAGGATGTAG 2232 0.5493 MSHLTPSSPPPQPNTTLDDRLAFFNQSMDLVQLPNLPTTRTRSRTLADLLKRVQDAQNDPPPAPPHHVLDLSSSSTIHPFVLSFSNLTYSVKLRRKFTFFPATTVSSPDHETKPNGTKTLLNDISGEARDGEIMAVLGASGSGKSTLIDALANRISKESLKGTVTLNGDVLNSSVLKVISAYVMQDDLLFPMLTVEETLMFAAEFRLPRSLSKSKKKARVQALIDQLGLRSAASTIIGDEGHRGVSGGERRRVSIGIDIIHDPIVLFLDEPTSGLDSTSAFMVVKVLQRIAQSGSIVIMSIHQPSYRILGLLDHMIFLSHGNTVYSGSPTNLPAFFSEFGHPIPENENRTEFALDLIRELEEEPGGTKSLVDFNKSWQLKEKNSAQAQNEPKNKPSLKDAISASISRGKLVSGANGNGNNSTAVVSVPAFANPFWMEMAVIGKRSLKNSWRMPELFGVRLGAVLVTGTILATIFWHLDDSPKGVQERVGFFAFAMSTTFYTCAEAIPVFLQERYIFMRETAYNAYRRSSYVLSHAIISLPSLVFLSFAFAATTFWAVGLAGGSSGFVFYFLVIVASFWAGSSFVTFLSGVVSHVMIGFTVVVAILAYFLLFSGFFISRDRIPPYWLWFHYLSLVKYPYEGVLQNEFDVNSPRCFVRGIQMFDNTPLGMVADTLKVELLKSMSNTLGMNISRSTCVITGADVLKQQGITQLSKWSCLWITVAWGFFFRFLFYLTLLFGSKNKRM* 744
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g1787 743 Pfam ABC transporter 121 273 IPR003439 GO:0005524
Pvu1g1787 743 PANTHER ABC TRANSPORTER G FAMILY MEMBER 16 43 736 - -
Pvu1g1787 743 Pfam ABC-2 type transporter 302 385 IPR043926 GO:0140359
Pvu1g1787 743 Gene3D - 109 336 IPR027417 -
Pvu1g1787 743 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 112 337 IPR027417 -
Pvu1g1787 743 SMART AAA_5 130 322 IPR003593 -
Pvu1g1787 743 ProSitePatterns ABC transporters family signature. 245 259 IPR017871 GO:0005524
Pvu1g1787 743 PANTHER ABC TRANSPORTER G FAMILY MEMBER 28 43 736 - -
Pvu1g1787 743 Pfam ABC-2 type transporter 440 646 IPR013525 GO:0016020|GO:0140359
Pvu1g1787 743 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 105 345 IPR003439 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu1g1787 Pvu-Chr1 43584693 43587093 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu1g1787 120 305 Calmodulin-binding Proteins AT2G36910 30.159 2.16e-11 65.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu1g1787 K05681 - gmx:100803426 1243.02