Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g1771 ATGTATCCGTATATAAACCTTCGTAAAGGAATAAACCTTTTAAAGTTAAAAGCACAAGTGAGCGTGGGGCACAAGCCTCACGTGGACCACATATTTTGGCTCTTACAACGACAACATTCGGGAAGCAACTACGTAACCAGGGGCGTTCGCGTAATTACAACTAGTCAAAAGCGTAGTCCAACATGCATGTTAGGAATGAAGAGACAACGAGGTAATGAAGGATTCGAGAACTTAGATTTGGCAAAGTGTCTTTTGCTGTTCTCTTGTCCACAAGAAAGTAACAAGGCACAAGAGAAAAGTTTTGGTTCTGCGGAATTTGAGTGCAAGACCTGCAACCGCAAGTTCTCATCTTTTCAAGCACTGGGAGGGCACAGGGCAAGCCACAAGAAGCAGAAAGTAGAAGGGGAAGAACTGAAAGAACAGGGAAAAAGTCTTAGCTTGTGGAGCAAACCCAAAATGCACGAGTGCTCCATCTGTGGCCAAGAATTCTCTCTGGGGCAGGCTCTGGGAGGACACATGAGAAAACATAGAGGTGTCAGCAACGAAGGGTTTGTTCCTATTCCTTCTATCGACCAAGTTATTGCCAAAATCCCAGTTCTGAAAAGGTCCAACAGCACCAGGGTTATGTGCTTGGACTTGGAGTTACACCTCTAG 654 0.4511 MYPYINLRKGINLLKLKAQVSVGHKPHVDHIFWLLQRQHSGSNYVTRGVRVITTSQKRSPTCMLGMKRQRGNEGFENLDLAKCLLLFSCPQESNKAQEKSFGSAEFECKTCNRKFSSFQALGGHRASHKKQKVEGEELKEQGKSLSLWSKPKMHECSICGQEFSLGQALGGHMRKHRGVSNEGFVPIPSIDQVIAKIPVLKRSNSTRVMCLDLELHL* 218
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g1771 217 ProSiteProfiles Zinc finger C2H2 type domain profile. 154 181 IPR013087 -
Pvu1g1771 217 PANTHER ZINC FINGER PROTEIN ZAT5 66 217 - -
Pvu1g1771 217 PANTHER C2H2 TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY PROTEIN 66 217 - -
Pvu1g1771 217 SMART c2h2final6 106 128 IPR013087 -
Pvu1g1771 217 SMART c2h2final6 154 176 IPR013087 -
Pvu1g1771 217 Pfam C2H2-type zinc finger 106 131 - -
Pvu1g1771 217 Pfam C2H2-type zinc finger 154 178 - -
Pvu1g1771 217 ProSitePatterns Zinc finger C2H2 type domain signature. 108 128 IPR013087 -
Pvu1g1771 217 Gene3D Classic Zinc Finger 103 178 - -
Pvu1g1771 217 ProSitePatterns Zinc finger C2H2 type domain signature. 156 176 IPR013087 -
Pvu1g1771 217 SUPERFAMILY beta-beta-alpha zinc fingers 106 176 IPR036236 -
Pvu1g1771 217 ProSiteProfiles Zinc finger C2H2 type domain profile. 106 133 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu1g1771 Pvu-Chr1 43400258 43401729 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu1g1771 66 215 C2H2 Transcription Factor Family AT2G37430 45.912 2.90e-35 121
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Pvu1g1771 zf-C2H2_6 2.6e-09 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu1g1771 - - pvu:PHAVU_001G170800g 446.817
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu1g1771 1 43400258 43401729 Pvu7g1634 7 38551904 38552756 PCT