Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g1757 ATGGCTTCGCGGCGGCTCCGGGACCTCCAATCCCAAGCGGCGAACAAGATCTGCGTCGACTGTTCCCAGAAGAATCCGCAATGGGCGTCAGTGTCGTACGGAGTCTTTATGTGCTTAGAGTGCTCCGGCAAGCACCGCGGCCTCGGCGTCCACATCTCCTTCGTTCGATCCGTCACCATGGATTCCTGGTCCGAAATCCAGATCAAGAAGATGGAAGCTGGAGGCAACGATAAACTCAACTCCTTTCTCAAGCAATACGGCATCGCCAAGGAAACCGACATCGTTGCCAAGTACAATTCCAACGCCGCCTCCGTCTACCGCGACCGCATCCAGGCCATCGCCGACGGCCGCCCCTGGCGGGATCCCCCCGTCGTCAAGGAGACCATTCGCTCCTCAGTCTCCAAGGGAAAGCCGCCCCTATCCACCAGCAACAACGGCGGATGGGATAATTGGGACGCGGACGATGGGATCGGATCGGCGCGGGCGGGCTCCGATCTGCGGCGGAACCAATCCACCGGCGATGTACGGGGGTTCGGCGGCGGCGGGAGCGTGGCGAGATCGAAGTCGACGGAGGATATGTACACGCGCGCACAGCTTGAAGCCTCTGCTGCCAATAAGGAGGATTTCTTCGCGAGGAGGAGGGCGGAGAATGAGGCGCGACCGGAGGGGCTTCCGCCTTCGCAGGGTGGCAAATACGTTGGGTTCGGATCCGGCCCCGCCCCGAGCCAAAGGGTTAATCAGCAAAACGATTATTTATCTGTCGTTTCTCAGGGATTCGGTAAATTGTCGTTGGCTGCTGCTTCTGCGGCTCAGTCCGCTGCCAGTGTTGTTCAGGCCGGGACAAAAGAGATCTCTGCTAAGGTAAAAGAGGGTGGTTATGATTACAAGGTCAATGAAACTGTCAATGTTGTCTCTCAGAAGACATCAGAGATTGGACATAGGACATGGGGTATAATGAGAGGGGTCATGGCAATGGCTACACAGAAGGTTGAGGAATACACTAGAGATAATCCAAATGGGACATCTGATAACTGGAAACGAAATGAAACTGATAAAAACGGTTTCTATCAGGAGTTTAATCAAGAGAACAAAGGCTGGAATTCTTCTGGCAGAGAAGGACAACACTCAACGGGTAGACAAACTAATTCAAGCTCTTGGGACGATTGGGACCACGAAGATTCTAGGAAGGAAGAACCTGCAAAAGGATCGTCTCATCAGTCATCAGGCGGGCGATCTGATACTAACAACTCTAGCTCTTGGGATGACTGGGACCATGAAGATACAAGGAAGAAAGAAGCAGCTAAAGGGTCAGCTGCCCATAGCAGTGATGGGTGGGCTGGTTGGGATAATAACAAAGATGAAGGATTTGACGATTTCTATGGGAATGCATCTAATAATAAAGCTGCTGGTCATAATGATAAGGCGGGTGTTGCCTGGACAGGAGGAGGTTTTCTCTAA 1458 0.5309 MASRRLRDLQSQAANKICVDCSQKNPQWASVSYGVFMCLECSGKHRGLGVHISFVRSVTMDSWSEIQIKKMEAGGNDKLNSFLKQYGIAKETDIVAKYNSNAASVYRDRIQAIADGRPWRDPPVVKETIRSSVSKGKPPLSTSNNGGWDNWDADDGIGSARAGSDLRRNQSTGDVRGFGGGGSVARSKSTEDMYTRAQLEASAANKEDFFARRRAENEARPEGLPPSQGGKYVGFGSGPAPSQRVNQQNDYLSVVSQGFGKLSLAAASAAQSAASVVQAGTKEISAKVKEGGYDYKVNETVNVVSQKTSEIGHRTWGIMRGVMAMATQKVEEYTRDNPNGTSDNWKRNETDKNGFYQEFNQENKGWNSSGREGQHSTGRQTNSSSWDDWDHEDSRKEEPAKGSSHQSSGGRSDTNNSSSWDDWDHEDTRKKEAAKGSAAHSSDGWAGWDNNKDEGFDDFYGNASNNKAAGHNDKAGVAWTGGGFL* 486
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g1757 485 MobiDBLite consensus disorder prediction 361 485 - -
Pvu1g1757 485 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD6-RELATED 2 409 IPR044519 GO:0005096|GO:0016192
Pvu1g1757 485 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD6-RELATED 404 485 IPR044519 GO:0005096|GO:0016192
Pvu1g1757 485 SUPERFAMILY ArfGap/RecO-like zinc finger 3 109 IPR037278 -
Pvu1g1757 485 MobiDBLite consensus disorder prediction 403 417 - -
Pvu1g1757 485 MobiDBLite consensus disorder prediction 134 149 - -
Pvu1g1757 485 MobiDBLite consensus disorder prediction 129 190 - -
Pvu1g1757 485 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD6-RELATED 2 409 - -
Pvu1g1757 485 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD6-RELATED 404 485 - -
Pvu1g1757 485 MobiDBLite consensus disorder prediction 418 437 - -
Pvu1g1757 485 MobiDBLite consensus disorder prediction 361 384 - -
Pvu1g1757 485 PRINTS HIV Rev interacting protein signature 15 34 IPR001164 GO:0005096
Pvu1g1757 485 PRINTS HIV Rev interacting protein signature 34 51 IPR001164 GO:0005096
Pvu1g1757 485 PRINTS HIV Rev interacting protein signature 55 76 IPR001164 GO:0005096
Pvu1g1757 485 SMART arf_gap_3 3 119 IPR001164 GO:0005096
Pvu1g1757 485 Gene3D Arf GTPase activating protein 1 124 IPR038508 -
Pvu1g1757 485 MobiDBLite consensus disorder prediction 215 245 - -
Pvu1g1757 485 CDD ArfGap_ArfGap1 2 116 - -
Pvu1g1757 485 ProSiteProfiles ARF GTPase-activating proteins domain profile. 3 109 IPR001164 GO:0005096
Pvu1g1757 485 MobiDBLite consensus disorder prediction 385 402 - -
Pvu1g1757 485 Pfam Putative GTPase activating protein for Arf 4 103 IPR001164 GO:0005096
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu1g1757 Pvu-Chr1 43235276 43239596 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu1g1757 4 86 C2H2 Transcription Factor Family AT4G21160 50.000 2.16e-22 96.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu1g1757 K12492 - gmx:100801306 801.201
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu1g1757 1 43235276 43239596 Pvu1g1757 1 43235276 43239596 ECH
Pvu1g1757 1 43235276 43239596 Pvu7g1618 7 38261335 38265910 PCT